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Research article
LINC00174 Facilitates Proliferation and Migration of Colorectal Cancer Cells via MiR-3127-5p/ E2F7 Axis
1Department of Gastroenterology, People’s Hospital of Ningxia Hui Autonomous Region, Jinfeng District, Yinchuan City, Ningxia Hui Autonomous Region 750021, P.R. China
2Department of Anatomy, Ningxia Medical University, Xingqing District, Yinchuan City, Ningxia Hui Autonomous Region 750003, P.R. China
J. Microbiol. Biotechnol. 2021; 31(8): 1098-1108
Published August 28, 2021 https://doi.org/10.4014/jmb.2103.03001
Copyright © The Korean Society for Microbiology and Biotechnology.
Abstract
Keywords
Graphical Abstract
Introduction
Colorectal cancer (CRC) is a common cancer in the human digestive tract [1]. Tumor growth and metastasis are the main causes of death in CRC patients, especially in patients with advanced CRC [2]. In recent years, there has been great development in the treatment of CRC, but there are still many challenges [3, 4]. Therefore, the determination of CRC biomarkers has very special significance for improvement of prognosis [5].
Long non-coding RNAs (lncRNAs) play a meaningful role in the occurrence of CRC and can be used as a marker for CRC diagnosis [6]. Yin
Understanding the mechanism of lncRNAs and their target genes has gradually become the focus of academic study [17]. LncRNAs participate in tumor progression through multiple mechanisms [18, 19]. For example, CRNDE affects the progress of CRC through miR-181a-5p acting on β-catenin and TCF4 [20]. LncRNA H19 regulates the biological characteristics and EMT process of CRC cells through the miR-29b-3p/PGRN/Wnt axis [21]. The above studies indicate that lncRNA-miRNA interaction plays a key role in CRC.
In addition, we obtained 7 miRNAs that bind to LINC00174 and are lowly expressed in rectal adenocarcinoma through bioinformatics analysis. Among them, miR-3127-5p has been rarely studied in diseases, and so far there have been only two reports. MiR-3127-5p was found to play a role in suppressing cancer in non-small-cell lung cancer (NSCLC) [22]. Moreover, as the target miRNA of lncRNA GACAT3, miR-3127-5p affects the progression of glioma by regulating the expression of ELAVL1 [23]. Although the latest research shows that miR-3127-5p is differentially expressed in CRC, its function and mechanism are still unclear [24]. Thus, we constructed clinical and cell assays accompanying bioinformatics analysis to investigate whether LINC00174 affects the biological process of CRC cells by regulating miR-3127-5p.
Materials and Methods
Ethics Statement and Tissue
Prior to this study, all patients were informed and signed informed consent. The clinical specimens were obtained from 80 CRC patients who came to our hospital from June 2019 to April 2020, after approval of the ethics committee of People’s Hospital of Ningxia Hui Autonomous Region (CR201905020). The relationship between LINC00174 and clinical data characteristics of 80 CRC patients were shown in Table 1.
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Table 1 . The correlation between the expression of LINC00174 and clinical characteristics of patients with colorectal cancer.
Clinicopathlogical features LINC00174 expression p valueLow (%) High (%) Gender Male 24(54.5) 20(45.5) 0.875 Female 19(52.8) 17(47.2) Age < 60 15(62.5) 9(37.5) 0.304 ≥ 60 28(50) 28(50) Tumor size (cm) < 4 24(77.4) 7(22.6) <0.001 ≥ 4 19(38.8) 30(61.2) Lymphovascular invasion Absent 35(66.0) 18(34.0) 0.002 Present 8(29.6) 19(70.4) Differentiation Well-moderate 22(46.8) 25(53.2) 0.137 Poor 21(63.6) 12(36.4) Depth of invasion T1+T2 23(75.8) 8(24.2) 0.004 T3+T4 20(46.8) 29(53.2) Lymph node metastasis N0 25(73.5) 9(26.5) 0.002 N1-N2 18(39.1) 28(60.1) Distant metastasis M0 33(63.5) 19(36.5) 0.0176 M1 10(35.7) 18(64.3) TNM stage Ⅰ+Ⅱ 25(69.4) 11(30.6) 0.011 Ⅲ+Ⅳ 18(40.9) 26(59.1)
Bioinformatics Prediction
Target miRNAs of LINC00174 were predicted by starBase v2.0 website (http://starbase.sysu.edu.cn/starbase2/). The miRWalk (http://mirwalk.umm.uni-heidelberg.de/), miRDB (http://mirdb.org/), starBase, Targetscan (http://www.targetscan.org/vert_72/docs/help.html) were used to predict miR-3127-5p target genes. The Cancer Genome Atlas (TCGA) database (http://cancergenome.nih.gov/) analyzed miRNAs or mRNAs that are abnormal expressed in rectal adenocarcinoma. Venn diagram (Venny 2.1.0 website) was used to analyze the intersection of the data generated from the databases.
Cell and Culture
CCD-18Co cell lines (CRL-1459, normal) and LS174T cell lines (CL-188, tumor) procured by American Type Culture Collection (ATCC, USA), were cultivated in EMEM (30-2003, ATCC, USA) containing 10 % Fetal Bovine Serum (FBS) (30-2020, ATCC) in 37°C, 5% CO2. HCT116 (CCL-247), HCT-15 (CCL-225), SW480 (CCL-228), LOVO (CCL-229) cell lines and the corresponding medium were also purchased from ATCC. LOVO cells were cultured in F-12K Medium (30-2004); HCT116 cells were cultivated in McCoy's 5A Medium (30-2007); HCT-15 cells were cultivated in RPMI-1640 Medium (30-200); SW480 cells were cultivated in Leibovitz's L-15 Medium (30-2008).
Cell Transfection
To overexpress LINC00174, SW480 or LOVO cells were transfected with pcDNA3.1-LINC00174 plasmid using Lipofectamine 3000 (L3000015, Invitrogen, USA) refer to the instructions. The pcDNA3.1 blank plasmid (V79520, Invitrogen) was served as NC group. For the silencing of LINC00174, shLINC00174 plasmids (target sequence: TCTCCAGGTCGTTTCTCCCTGTCTT, GenePharma Company, China) was transfected into SW480 or LOVO cells using Lipofectamine 3000. MiR-3127-5p mimics (miR10014990-1-5) and mimic control (miR1N0000001-1-5) were obtained from Guangzhou RIBOBIO Biotechnology Co. LTD (China). When the confluence of SW480 or LOVO cells in a 24-well plate reached 70-90%, they were ready for transfection.
Real Time Quantitative Polymerase Chain Reaction
RNAiso Plus (9108Q, Takara, China) or RNAiso for Small RNA (9753Q) were used to isolate total RNA or miRNA, as required. Reverse transcription step was refered to the instructions of PrimeScrip RT reagent Kit (RR037Q) produced by Takara, China. The RT-qPCR detection was constructed in the Mx3000P Real-Time QPCR System (Agilent, USA) with Takara TB Green Premix Ex Taq II (RR820Q, China), followed by the conditions set as below: pre-denaturation (95°C, 3 min), denaturation (95°C, 15 s) and annealing (60°C, 1 min) for a total of 40 cycles, and finally extended (68°C, 7 min). GAPDH or U6 were used as control for mRNA or miRNA, and the results were quantified in the form of 2-ΔΔCt method [16]. Sequences of the primers were listed as follows (5’-3’). LINC00174: (GGCCCAACACTTCCCTCAAA, CAGGGAGAAACGACCTGGAG); miR-3127-5p:(ATCAGGGCTTGTGGAATGGG, GTATCCAGTGCGTGTCGTGG); E2F7: (AAAGGGACTATTCCGACCCAT, ACTTGGATAGCGAGCTAGAAACT); SHBG: (GCCCAGGACAAGAGCCTATC, CCTTAGGGTTGGTAT CCCCATAA); GAPDH: (GCAAGAGCACAAGAGGAAGA, ACTGTGAGGAGGGGAGATTC); U6: (CTC GCTTCGGCAGCACA, AACGCTTCACGAATTTGCGT).
Cell Counting Kit (CCK)-8
After transfected for 24 h, SW480 or LOVO cells were replaced with fresh medium to continue culturing. Cells in good growth condition was taken to make a single cell suspension (1 × 104 cells/ml) and seeded in 96-well plates. When SW480 or LOVO cells were cultured for 24, 48, or 72 h, 10 μl of CCK-8 reagent (C0037, Beyotime, China) was added to each well for routine incubation for 1 h. Finally, iMark microplate reader from Bio-Rad (USA) was applied to detect the optical density value (OD450) wavelength of each well to indicate cell activity.
Cell Colony Formation Assay
Consistent with the above experiment, first, each group of cells was adjusted to a cell suspension (1 × 104 cells/ml) and routinely cultivated in a 6-well plate. At about 14 days of culture, macroscopic cell colonies grew in the culture plate. Next, each well was fixed with 4% paraformaldehyde for 15 min, and Giemsa staining reagent (32884, Sigma, USA) was added for staining for 15-20 min. Finally, the optical microscope (DMi8, Leica, Germany) took pictures to record the cell proliferation.
Wound Healing Assay
The pre-digested CRC cells (1 × 105 cells/ml) were added into ibidi cell plugin (ibidi, 81176, Germany) routinely incubated for 24 h. Next, the ibidi wound healing insert was raised with tweezers. Microscopic examination (CKX53, Olympus, Japan) was performed on the cells grown the day before (Magnification × 100).
Transwell
Matrix gel (354230, BD Biosciences, USA) was applied to the bottom membrane of the Transwell chamber (8 μm, BD Biosciences). Also, the Transwell chamber was inserted into the 24-well plate. 50 μl cell suspensions were seeded in the upper chamber, whilst RPMI-1640 medium with 10% FBS was added in lower chamber. After cells were cultured for 24 h, the chamber was removed. Invaded cells were fixed and then stained with 0.5% crystal violet for 30 min. Finally, five fields of the cells were randomly observed under the microscope to calculate the number of cell invasion (Magnification × 250).
Target Gene Verification
The wild-type or mutant sequences of LINC00174 or E2F7 were integrated into the pmirGLO vector (E1330, Promega, USA). Different recombinant plasmids together with miR-3127-5p (M) or mimic control (Blank) were transfected into SW480 or LOVO cells, respectively. Luciferase activities were measured in dual luciferase system (D0010-100T, Solarbio, China) by GloMax 20/20 detector (Promega). Imprint RNA Immunoprecipitation Kit (RIP, Sigma-Aldrich) was constructed to RNA immunoprecipitation (RIP) assays. Briefly, CRC cells were lysed using RIR lysisi buffer, and protein A/G beads conjugated with anti-Argonaute2 (Ago 2) was added to cell extract for 6 h at 4°C. After that, samples were incubated with roteinase K to isolate RNA-protein complexes. IgG was served as control. Finally, immunoprecipitated RNA was subjected to RT-qPCR detection.
Western Blot
The proteins in this study were lysed using RIPA Lysis Buffer (C05-01001, Bioss, China), followed by quantified with BCA Kit (A53225, ThermoFisher, USA). 20 μg of protein was taken to perform electrophoresis with SDS-PAGE, and then transferred to PVDF membrane (IPVH00010, Millipore, USA). After sealing with blocking Buffer (37565, Thermo Scientific) for 2 h, membranes were then incubated with primary antibodies (4°C, overnight). Afterwards, membranes were incubated with secondary antibodies. Protein bands were visualized with ECL luminous fluid (WBKlS0100, Millipore) and analyzed with gel imaging system (Tanon 2500, Solarbio, China) and Quantity One image analysis software (Bio-Rad, USA). All antibodies produced by Abcam (UK) were as follows: E-Cadherin (ab40772, 1/10000, 97 kDa); N-Cadherin (ab18203, 1/10000, 130 kDa); Vimentin (ab92547, 1/1000, 54 kDa); E2F7 (24489-1-AP, 1/1000, 90 kDa, Proteintech, USA); GAPDH (ab8245, 1/5000, 36 kDa); Goat Anti-Rabbit (ab205718); Goat Anti-Mouse (ab205719).
Statistical Analysis
Data were described by mean ± SD; comparison between count data groups was analyzed using χ2 test. The data of Fig. 1B used paired sample
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Fig. 1. Expression of LINC00174 in colorectal cancer (CRC).
(A) The starBase website (http://starbase.sysu.edu.cn/starbase2/ ) was used to predict the expression of LINC00174 in colon adenocarcinoma (COAD). Cancer samples = 471, Normal samples = 41.
P = 3.9E-9. (B) The expression of LINC00174 in cancer tissues and adjacent tissues of CRC patients (N = 80) was detected by real-time quantitative PCR (RT-qPCR).
Results
LINC00174 Was Up-Regulated in CRC and Was Associated with Poor Prognosis
Fig. 1A showed LINC00174 was highly expressed in colon adenocarcinoma (COAD) (
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Fig. 2. LINC00174 modulated the viability and proliferation of colorectal cancer (CRC) cells.
(A) The expression of LINC00174 in human normal colon cell line and CRC cell line was detected by RT-qPCR. (B-C) The transfection rate of SW480 or LOVO cells transfected with LINC00174 overexpression or shLINC00174 was detected by RT-qPCR. (D-E) High expression of LINC00174 promoted cell viability; low expression of LINC00174 had done the opposite, as determined by Cell Counting Kit (CCK)-8. (F-I) Clone formation assay was used to test the effect of LINC00174 overexpression or knockdown on SW480 or LOVO cell proliferation. ++
p < 0.01, +++p < 0.001 vs CCD-18Co; *p < 0.05, **p < 0.01, ***p < 0.001 vs Negative Control (NC).
Overexpression of LINC00174 Promoted the Biological Function of CRC Cells, while Silencing LINC00174 Was the Opposite
To understand the impact of LINC00174 on the biological characteristics of CRC, we transfected LINC00174 overexpression plasmids and shLINC00174 into SW480 cells or LOVO cells. As we wished, LINC00174 was successfully overexpressed or reduced (
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Fig. 3. LINC00174 regulated the migration and invasion of colorectal cancer (CRC) cells.
(A-D) The migration distance of cells in the CRC cell lines of the Control, NC, LINC00174, shLINC00174 groups was determined by the wound healing assay (Magnification×100). (E-H) Overexpression of LINC00174 promoted cell invasion; LINC00174 knockdown had the opposite effect, detected by Transwell experiment (Magnification × 250). *
p < 0.05, **p < 0.01 vs NC.
LINC00174 May Target miR-3127-5p to Participate in CRC Progression
In order to explore the molecular mechanism of LINC00174 functioning, we predicted 81 possible miRNAs bound by LINC00174 through the starBase website, and obtained 132 miRNAs with low expression in rectal adenocarcinoma through the TCGA database. Subsequently, we used the Venny 2.1.0 website to take the intersection of the miRNAs obtained from the two databases, and finally obtained 7 miRNAs, namely hsa-miR-378a-3p, hsa-miR-3127-5p, hsa-miR-150-5p, hsa-miR-486-5p, hsa-miR-760, hsa-miR-328-3p, hsa-miR-3173-5p (Fig. 4A). Moreover, miR-3127-5p was found to be most lowly expressed in SW480 and LOVO cells (
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Fig. 4. MiR-3127-5p may be a potential therapeutic target in colorectal cancer (CRC).
(A) The starBase website was used to predict the miRNAs that LINC00174 may bind to, and the TCGA database (http://cancergenome.nih.gov/) was used to obtain miRNAs that were lowly expressed in rectal adenocarcinoma, using the Venny 2.1.0 website to obtain the intersection. (B-C) The RT-qPCR was used to determine the expression of target miRNAs in SW480 and LOVO cells. +
p < 0.05, ++p < 0.01, +++p < 0.001 vs NC.
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Fig. 5. LINC00174 affected the proliferation of colorectal cancer (CRC) cells through miR-3127-5p.
(A) The binding site of LINC00174 and miR-3127-5p was predicted using the starBase website. (B-E) Dual-luciferase report analysis and RNA immunoprecipitation verified the targeting relationship between LINC00174 and miR-3127-5p. (F-G) The transfection rate of miR-3127-5p mimic transfected SW480 or LOVO cells was detected by RT-qPCR. U6 was internal reference. (H-I) The expression of miR-3127-5p in Control, LINC00174, LINC00174+miR-3127-5p mimic control, LINC00174+miR-3127-5p mimic, miR-3127-5p mimic group was detected by RT-qPCR. U6 was internal reference. (J-M) Clone formation experiments were used to detect the proliferation of SW480 or LOVO cells in each group. ++
p < 0.01, +++p < 0.001 vs miR-3127-5p mimic control (MC); &&p < 0.01, &&&p < 0.001 vs Anti-lgG; **p < 0.01, ***p < 0.001 vs Control; #p < 0.05, ##p < 0.01, ###p < 0.001 vs LINC00174; ^^p < 0.01, ^^^p < 0.001 vs M.
LINC00174 Affected the Biological Characteristics of CRC Cells through miR-3127-5p
Whether LINC00174 regulates the function of CRC cells through miR-3127-5p, we have done the following experiments to verify this. First, we tested the transfection rate of miR-3127-5p mimic and showed that miR-3127-5p mimic was successfully transfected into SW480 cells or LOVO cells (
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Fig. 6. LINC00174 regulated the migration and invasion of colorectal cancer (CRC) cells by targeting miR- 3127-5p.
(A-D) The cell migration distances in the CRC cell lines of Control, LINC00174, LINC00174+miR-3127-5p mimic control, LINC00174+miR-3127-5p mimic, miR-3127-5p mimic groups were determined by wound healing assay (Magnification × 100). (E-H) Transwell experiment was used to detect the invasion rate of CRC cells in each group (Magnification × 250). **
p < 0.01 vs Control; #p < 0.05, ##p < 0.01 vs LINC00174; ^^p < 0.01, ^^^p < 0.001 vs M.
LINC00174 Regulated the EMT-Related Protein of CRC Cells through miR-3127-5p/E2F7 Axis
In addition, we used miRWalk, miRDB, Starbase, Targetscan to predict miR-3127-5p target genes; and crossed the TCGA database with mRNA highly expressed in colorectal adenocarcinoma. As a result, 13 common mRNAs were obtained: GINS2, CDK10, PROX1, VAX1, ANKS6, OAS2, CIT, TMEM120B, SERPINH1, E2F7, SHBG, TKT, and NTMT1 (Fig. 7A). Among them, we selected the top two genes in the context and score in Targetscan: SHBG and E2F7 for the next step. E2F7 expression was suppressed in miR-3127-5p mimic group (
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Fig. 7. E2F7 was a target gene of miR-3127-5p.
(A) The miRWalk (http://mirwalk.umm.uni-heidelberg.de/), miRDB (http://mirdb.org/), starBase, Targetscan (http://www.targetscan.org/vert_72/docs/help.html) were used to predict miR-3127- 5p target genes. The Cancer Genome Atlas (TCGA) database (http://cancergenome.nih.gov/) analyzed mRNAs that are abnormal expressed in rectal adenocarcinoma. Venn diagram was used to analyze the intersection of the data generated from the databases. (B-C) SHBG and E2F7 expressions were detected by RT-qPCR. (D-F) E2F7 bound to miR-3127-5p as predicted and verified by Targetscan and dual luciferase assay. ++
p < 0.01, +++p < 0.001 vs MC.
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Fig. 8. LINC00174 regulated the EMT-related protein of CRC cells through miR-3127-5p/E2F7 axis.
(A-D) Western blot was used to detect the effects of LINC00174 and miR-3127-5p on the expressions of E2F7, E-Cadherin, NCadherin, and Vimentin in colorectal cancer (CRC) cells. *
p < 0.05, **p < 0.01, ***p < 0.001 vs Control; #p < 0.05, ##p < 0.01, ###p < 0.001 vs LINC00174; ^p < 0.05, ^^p < 0.01, ^^^p < 0.001 vs M.
Discussion
LncRNAs play various roles in the progression of CRC [18, 25]. LncRNA MALAT1 may promote the biological characteristics of CRC through its target protein AKAP-9 [26]. Studies by Zhu
LINC00174 plays a pro-cancer role by regulating different functions of cancer cells. In glioma, LINC00174 accelerated carcinogenesis of glioma by promoting cell proliferation, migration, invasion and glycolysis of glioma cells [10, 12]; moreover, LINC00174 down-regulation decreases chemoresistance to temozolomide in human glioma cells [11]. In laryngeal papilloma, LINC00174 enhanced the proliferation and apoptosis evasion of laryngeal papilloma cells by regulating miR-4500/BZW2 axis [15]. LINC00174 involved in cell migration and lipid metabolism, and is a novel prognostic factor in thymic epithelial tumors [14]. It has been reported that LINC00174 can be used as the ceRNA of miR-1910-3p, regulating the target gene TAZ to facilitate the progress of CRC [16], suggesting that LINC00174 can be used as a new drug therapy target for CRC. In this study, LINC00174 was up-regulated in CRC clinical samples and cells, and the abnormal expression of LINC00174 was significantly associated with poor prognosis in patients with CRC. In cell experiments, we found that LINC00174 promoted CRC cell viability, which is consistent with previous studies [16]. However, the difference is that heterologous overexpression of LINC00174 also accelerated the migration and invasion ability of CRC cells, and may promote EMT protein and E2F7 by competitively binding miR-3127-5p to play a cancer-promoting role in CRC. In addition, some scholars have studied the role of LINC00174 in other diseases [10, 11, 28]. Our experimental results are consistent with the report by Wang
More and more studies have shown that lncRNA can affect the binding of miRNA and its target gene by binding to the miRNA site to regulate the expression of the target gene, which is the ceRNAs regulatory network [31]. For example, LncRNA UICLM as a ceRNA of miR-215 regulates the expression of ZEB2, thereby promoting the proliferation, invasion, EMT and stem cell characteristic functions of CRC, and promoting liver metastasis of CRC [19]. Similarly, we propose to assume that LINC00174 can be used as a "molecular sponge", blocking miR-3127-5p’s post-transcriptional inhibition of downstream target genes, so that the function of target genes can be restored. Based on bioinformatics analysis, we examined the effects of LINC00174 and miR-3127-5p on the expression of E2F7, and found that LINC00174 can regulate the expression of E2F7 through miR-3127-5p in CRC cells. Interestingly, E2F7 has been shown to be highly expressed in CRC and has the promoting effect on the malignant biological function of CRC [32]. Of course, more downstream regulatory networks require further experimentation.
MiRNA plays a momentous role in the progression of CRC by up-regulating oncogenes or down-regulating oncogenes [33]. For example, the latest research found that miR-185-3p is down-regulated in CRC, and up-regulating miR-185-3p can enhance the chemotherapy sensitivity of CRC cells by targeting AQP5 [34]. Ma
In summary, the expression of LINC00174 is up-regulated and the expression of miR-3127-5p is down-regulated in CRC cells. Intervention of LINC00174 expression can play a role in promoting the malignant phenotype and EMT of CRC cells through miR-3127-5p/E2F7 axis. This study provides an experimental basis for the application of LINC00174 and miR-3127-5p in the diagnosis and molecular targeting of CRC. The next step will continue to explore the impact of LINC00174/miR-3127-5p/ E2F7 axis on CRC in vivo.
Acknowledgments
This work was supported by Ningxia Hui Autonomous Region Key R&D Program General Project[2019BEG03055].
Conflict of Interest
The authors have no financial conflicts of interest to declare.
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Related articles in JMB
Article
Research article
J. Microbiol. Biotechnol. 2021; 31(8): 1098-1108
Published online August 28, 2021 https://doi.org/10.4014/jmb.2103.03001
Copyright © The Korean Society for Microbiology and Biotechnology.
LINC00174 Facilitates Proliferation and Migration of Colorectal Cancer Cells via MiR-3127-5p/ E2F7 Axis
Yuhong Ma1†*, Yuzhen Li1†, Yuanyuan Tang1, Ning Tang1, Dengke Wang2, and Xiaofei Li1
1Department of Gastroenterology, People’s Hospital of Ningxia Hui Autonomous Region, Jinfeng District, Yinchuan City, Ningxia Hui Autonomous Region 750021, P.R. China
2Department of Anatomy, Ningxia Medical University, Xingqing District, Yinchuan City, Ningxia Hui Autonomous Region 750003, P.R. China
Correspondence to:Yuhong Ma, hoym@163.com
Abstract
The literature indicates that LINC00174 promotes the growth of colorectal cancer (CRC) cells, but its research needs to be enriched. We tried to explore the function and mechanism of LINC00174 in CRC cell proliferation and migration. Bioinformatics analysis predicted the binding relationship and expressions of lncRNA, miRNA and mRNA. Clinical study analyzes the relationship between LINC00174 and clinical data characteristics of CRC patients. The expressions of LINC00174, miR-3127-5p and E2F7 were verified by RT-qPCR, and the combination of the two was verified by dual luciferase analysis and RNA immunoprecipitation as needed. Western blot was used to detect the expression of EMT-related protein and E2F7 protein. Functional experiments were used to evaluate the function of the target gene on CRC cells. LINC00174 was up-regulated in CRC clinical samples and cells and was related to the clinical characteristics of CRC patients. High-expression of LINC00174, contrary to the effect of siLINC00174, promoted cell viability, proliferation, migration and invasion, up-regulated the expressions of N-Cadherin, Vimentin, E2F7, and inhibited the expression of E-Cadherin. MiR-3127-5p was one of the targeted miRNAs of LINC00174 and was down-regulated in CRC samples. In addition, miR-3127-5p mimic partially reversed the malignant phenotype of CRC cells induced by LINC00174. Besides, E2F7 was a target gene of miR-3127-5p, and LINC00174 repressed miR-3127-5p to regulate E2F7. Our research reveals that LINC00174 affected the biological characteristics of CRC cells through regulated miR-3127-5p/ E2F7 axis.
Keywords: LINC00174, colorectal cancer, migration, miR-3127-5p, E2F7, epithelial-mesenchymal transition
Introduction
Colorectal cancer (CRC) is a common cancer in the human digestive tract [1]. Tumor growth and metastasis are the main causes of death in CRC patients, especially in patients with advanced CRC [2]. In recent years, there has been great development in the treatment of CRC, but there are still many challenges [3, 4]. Therefore, the determination of CRC biomarkers has very special significance for improvement of prognosis [5].
Long non-coding RNAs (lncRNAs) play a meaningful role in the occurrence of CRC and can be used as a marker for CRC diagnosis [6]. Yin
Understanding the mechanism of lncRNAs and their target genes has gradually become the focus of academic study [17]. LncRNAs participate in tumor progression through multiple mechanisms [18, 19]. For example, CRNDE affects the progress of CRC through miR-181a-5p acting on β-catenin and TCF4 [20]. LncRNA H19 regulates the biological characteristics and EMT process of CRC cells through the miR-29b-3p/PGRN/Wnt axis [21]. The above studies indicate that lncRNA-miRNA interaction plays a key role in CRC.
In addition, we obtained 7 miRNAs that bind to LINC00174 and are lowly expressed in rectal adenocarcinoma through bioinformatics analysis. Among them, miR-3127-5p has been rarely studied in diseases, and so far there have been only two reports. MiR-3127-5p was found to play a role in suppressing cancer in non-small-cell lung cancer (NSCLC) [22]. Moreover, as the target miRNA of lncRNA GACAT3, miR-3127-5p affects the progression of glioma by regulating the expression of ELAVL1 [23]. Although the latest research shows that miR-3127-5p is differentially expressed in CRC, its function and mechanism are still unclear [24]. Thus, we constructed clinical and cell assays accompanying bioinformatics analysis to investigate whether LINC00174 affects the biological process of CRC cells by regulating miR-3127-5p.
Materials and Methods
Ethics Statement and Tissue
Prior to this study, all patients were informed and signed informed consent. The clinical specimens were obtained from 80 CRC patients who came to our hospital from June 2019 to April 2020, after approval of the ethics committee of People’s Hospital of Ningxia Hui Autonomous Region (CR201905020). The relationship between LINC00174 and clinical data characteristics of 80 CRC patients were shown in Table 1.
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Table 1 . The correlation between the expression of LINC00174 and clinical characteristics of patients with colorectal cancer..
Clinicopathlogical features LINC00174 expression p valueLow (%) High (%) Gender Male 24(54.5) 20(45.5) 0.875 Female 19(52.8) 17(47.2) Age < 60 15(62.5) 9(37.5) 0.304 ≥ 60 28(50) 28(50) Tumor size (cm) < 4 24(77.4) 7(22.6) <0.001 ≥ 4 19(38.8) 30(61.2) Lymphovascular invasion Absent 35(66.0) 18(34.0) 0.002 Present 8(29.6) 19(70.4) Differentiation Well-moderate 22(46.8) 25(53.2) 0.137 Poor 21(63.6) 12(36.4) Depth of invasion T1+T2 23(75.8) 8(24.2) 0.004 T3+T4 20(46.8) 29(53.2) Lymph node metastasis N0 25(73.5) 9(26.5) 0.002 N1-N2 18(39.1) 28(60.1) Distant metastasis M0 33(63.5) 19(36.5) 0.0176 M1 10(35.7) 18(64.3) TNM stage Ⅰ+Ⅱ 25(69.4) 11(30.6) 0.011 Ⅲ+Ⅳ 18(40.9) 26(59.1)
Bioinformatics Prediction
Target miRNAs of LINC00174 were predicted by starBase v2.0 website (http://starbase.sysu.edu.cn/starbase2/). The miRWalk (http://mirwalk.umm.uni-heidelberg.de/), miRDB (http://mirdb.org/), starBase, Targetscan (http://www.targetscan.org/vert_72/docs/help.html) were used to predict miR-3127-5p target genes. The Cancer Genome Atlas (TCGA) database (http://cancergenome.nih.gov/) analyzed miRNAs or mRNAs that are abnormal expressed in rectal adenocarcinoma. Venn diagram (Venny 2.1.0 website) was used to analyze the intersection of the data generated from the databases.
Cell and Culture
CCD-18Co cell lines (CRL-1459, normal) and LS174T cell lines (CL-188, tumor) procured by American Type Culture Collection (ATCC, USA), were cultivated in EMEM (30-2003, ATCC, USA) containing 10 % Fetal Bovine Serum (FBS) (30-2020, ATCC) in 37°C, 5% CO2. HCT116 (CCL-247), HCT-15 (CCL-225), SW480 (CCL-228), LOVO (CCL-229) cell lines and the corresponding medium were also purchased from ATCC. LOVO cells were cultured in F-12K Medium (30-2004); HCT116 cells were cultivated in McCoy's 5A Medium (30-2007); HCT-15 cells were cultivated in RPMI-1640 Medium (30-200); SW480 cells were cultivated in Leibovitz's L-15 Medium (30-2008).
Cell Transfection
To overexpress LINC00174, SW480 or LOVO cells were transfected with pcDNA3.1-LINC00174 plasmid using Lipofectamine 3000 (L3000015, Invitrogen, USA) refer to the instructions. The pcDNA3.1 blank plasmid (V79520, Invitrogen) was served as NC group. For the silencing of LINC00174, shLINC00174 plasmids (target sequence: TCTCCAGGTCGTTTCTCCCTGTCTT, GenePharma Company, China) was transfected into SW480 or LOVO cells using Lipofectamine 3000. MiR-3127-5p mimics (miR10014990-1-5) and mimic control (miR1N0000001-1-5) were obtained from Guangzhou RIBOBIO Biotechnology Co. LTD (China). When the confluence of SW480 or LOVO cells in a 24-well plate reached 70-90%, they were ready for transfection.
Real Time Quantitative Polymerase Chain Reaction
RNAiso Plus (9108Q, Takara, China) or RNAiso for Small RNA (9753Q) were used to isolate total RNA or miRNA, as required. Reverse transcription step was refered to the instructions of PrimeScrip RT reagent Kit (RR037Q) produced by Takara, China. The RT-qPCR detection was constructed in the Mx3000P Real-Time QPCR System (Agilent, USA) with Takara TB Green Premix Ex Taq II (RR820Q, China), followed by the conditions set as below: pre-denaturation (95°C, 3 min), denaturation (95°C, 15 s) and annealing (60°C, 1 min) for a total of 40 cycles, and finally extended (68°C, 7 min). GAPDH or U6 were used as control for mRNA or miRNA, and the results were quantified in the form of 2-ΔΔCt method [16]. Sequences of the primers were listed as follows (5’-3’). LINC00174: (GGCCCAACACTTCCCTCAAA, CAGGGAGAAACGACCTGGAG); miR-3127-5p:(ATCAGGGCTTGTGGAATGGG, GTATCCAGTGCGTGTCGTGG); E2F7: (AAAGGGACTATTCCGACCCAT, ACTTGGATAGCGAGCTAGAAACT); SHBG: (GCCCAGGACAAGAGCCTATC, CCTTAGGGTTGGTAT CCCCATAA); GAPDH: (GCAAGAGCACAAGAGGAAGA, ACTGTGAGGAGGGGAGATTC); U6: (CTC GCTTCGGCAGCACA, AACGCTTCACGAATTTGCGT).
Cell Counting Kit (CCK)-8
After transfected for 24 h, SW480 or LOVO cells were replaced with fresh medium to continue culturing. Cells in good growth condition was taken to make a single cell suspension (1 × 104 cells/ml) and seeded in 96-well plates. When SW480 or LOVO cells were cultured for 24, 48, or 72 h, 10 μl of CCK-8 reagent (C0037, Beyotime, China) was added to each well for routine incubation for 1 h. Finally, iMark microplate reader from Bio-Rad (USA) was applied to detect the optical density value (OD450) wavelength of each well to indicate cell activity.
Cell Colony Formation Assay
Consistent with the above experiment, first, each group of cells was adjusted to a cell suspension (1 × 104 cells/ml) and routinely cultivated in a 6-well plate. At about 14 days of culture, macroscopic cell colonies grew in the culture plate. Next, each well was fixed with 4% paraformaldehyde for 15 min, and Giemsa staining reagent (32884, Sigma, USA) was added for staining for 15-20 min. Finally, the optical microscope (DMi8, Leica, Germany) took pictures to record the cell proliferation.
Wound Healing Assay
The pre-digested CRC cells (1 × 105 cells/ml) were added into ibidi cell plugin (ibidi, 81176, Germany) routinely incubated for 24 h. Next, the ibidi wound healing insert was raised with tweezers. Microscopic examination (CKX53, Olympus, Japan) was performed on the cells grown the day before (Magnification × 100).
Transwell
Matrix gel (354230, BD Biosciences, USA) was applied to the bottom membrane of the Transwell chamber (8 μm, BD Biosciences). Also, the Transwell chamber was inserted into the 24-well plate. 50 μl cell suspensions were seeded in the upper chamber, whilst RPMI-1640 medium with 10% FBS was added in lower chamber. After cells were cultured for 24 h, the chamber was removed. Invaded cells were fixed and then stained with 0.5% crystal violet for 30 min. Finally, five fields of the cells were randomly observed under the microscope to calculate the number of cell invasion (Magnification × 250).
Target Gene Verification
The wild-type or mutant sequences of LINC00174 or E2F7 were integrated into the pmirGLO vector (E1330, Promega, USA). Different recombinant plasmids together with miR-3127-5p (M) or mimic control (Blank) were transfected into SW480 or LOVO cells, respectively. Luciferase activities were measured in dual luciferase system (D0010-100T, Solarbio, China) by GloMax 20/20 detector (Promega). Imprint RNA Immunoprecipitation Kit (RIP, Sigma-Aldrich) was constructed to RNA immunoprecipitation (RIP) assays. Briefly, CRC cells were lysed using RIR lysisi buffer, and protein A/G beads conjugated with anti-Argonaute2 (Ago 2) was added to cell extract for 6 h at 4°C. After that, samples were incubated with roteinase K to isolate RNA-protein complexes. IgG was served as control. Finally, immunoprecipitated RNA was subjected to RT-qPCR detection.
Western Blot
The proteins in this study were lysed using RIPA Lysis Buffer (C05-01001, Bioss, China), followed by quantified with BCA Kit (A53225, ThermoFisher, USA). 20 μg of protein was taken to perform electrophoresis with SDS-PAGE, and then transferred to PVDF membrane (IPVH00010, Millipore, USA). After sealing with blocking Buffer (37565, Thermo Scientific) for 2 h, membranes were then incubated with primary antibodies (4°C, overnight). Afterwards, membranes were incubated with secondary antibodies. Protein bands were visualized with ECL luminous fluid (WBKlS0100, Millipore) and analyzed with gel imaging system (Tanon 2500, Solarbio, China) and Quantity One image analysis software (Bio-Rad, USA). All antibodies produced by Abcam (UK) were as follows: E-Cadherin (ab40772, 1/10000, 97 kDa); N-Cadherin (ab18203, 1/10000, 130 kDa); Vimentin (ab92547, 1/1000, 54 kDa); E2F7 (24489-1-AP, 1/1000, 90 kDa, Proteintech, USA); GAPDH (ab8245, 1/5000, 36 kDa); Goat Anti-Rabbit (ab205718); Goat Anti-Mouse (ab205719).
Statistical Analysis
Data were described by mean ± SD; comparison between count data groups was analyzed using χ2 test. The data of Fig. 1B used paired sample
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Figure 1. Expression of LINC00174 in colorectal cancer (CRC).
(A) The starBase website (http://starbase.sysu.edu.cn/starbase2/ ) was used to predict the expression of LINC00174 in colon adenocarcinoma (COAD). Cancer samples = 471, Normal samples = 41.
P = 3.9E-9. (B) The expression of LINC00174 in cancer tissues and adjacent tissues of CRC patients (N = 80) was detected by real-time quantitative PCR (RT-qPCR).
Results
LINC00174 Was Up-Regulated in CRC and Was Associated with Poor Prognosis
Fig. 1A showed LINC00174 was highly expressed in colon adenocarcinoma (COAD) (
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Figure 2. LINC00174 modulated the viability and proliferation of colorectal cancer (CRC) cells.
(A) The expression of LINC00174 in human normal colon cell line and CRC cell line was detected by RT-qPCR. (B-C) The transfection rate of SW480 or LOVO cells transfected with LINC00174 overexpression or shLINC00174 was detected by RT-qPCR. (D-E) High expression of LINC00174 promoted cell viability; low expression of LINC00174 had done the opposite, as determined by Cell Counting Kit (CCK)-8. (F-I) Clone formation assay was used to test the effect of LINC00174 overexpression or knockdown on SW480 or LOVO cell proliferation. ++
p < 0.01, +++p < 0.001 vs CCD-18Co; *p < 0.05, **p < 0.01, ***p < 0.001 vs Negative Control (NC).
Overexpression of LINC00174 Promoted the Biological Function of CRC Cells, while Silencing LINC00174 Was the Opposite
To understand the impact of LINC00174 on the biological characteristics of CRC, we transfected LINC00174 overexpression plasmids and shLINC00174 into SW480 cells or LOVO cells. As we wished, LINC00174 was successfully overexpressed or reduced (
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Figure 3. LINC00174 regulated the migration and invasion of colorectal cancer (CRC) cells.
(A-D) The migration distance of cells in the CRC cell lines of the Control, NC, LINC00174, shLINC00174 groups was determined by the wound healing assay (Magnification×100). (E-H) Overexpression of LINC00174 promoted cell invasion; LINC00174 knockdown had the opposite effect, detected by Transwell experiment (Magnification × 250). *
p < 0.05, **p < 0.01 vs NC.
LINC00174 May Target miR-3127-5p to Participate in CRC Progression
In order to explore the molecular mechanism of LINC00174 functioning, we predicted 81 possible miRNAs bound by LINC00174 through the starBase website, and obtained 132 miRNAs with low expression in rectal adenocarcinoma through the TCGA database. Subsequently, we used the Venny 2.1.0 website to take the intersection of the miRNAs obtained from the two databases, and finally obtained 7 miRNAs, namely hsa-miR-378a-3p, hsa-miR-3127-5p, hsa-miR-150-5p, hsa-miR-486-5p, hsa-miR-760, hsa-miR-328-3p, hsa-miR-3173-5p (Fig. 4A). Moreover, miR-3127-5p was found to be most lowly expressed in SW480 and LOVO cells (
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Figure 4. MiR-3127-5p may be a potential therapeutic target in colorectal cancer (CRC).
(A) The starBase website was used to predict the miRNAs that LINC00174 may bind to, and the TCGA database (http://cancergenome.nih.gov/) was used to obtain miRNAs that were lowly expressed in rectal adenocarcinoma, using the Venny 2.1.0 website to obtain the intersection. (B-C) The RT-qPCR was used to determine the expression of target miRNAs in SW480 and LOVO cells. +
p < 0.05, ++p < 0.01, +++p < 0.001 vs NC.
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Figure 5. LINC00174 affected the proliferation of colorectal cancer (CRC) cells through miR-3127-5p.
(A) The binding site of LINC00174 and miR-3127-5p was predicted using the starBase website. (B-E) Dual-luciferase report analysis and RNA immunoprecipitation verified the targeting relationship between LINC00174 and miR-3127-5p. (F-G) The transfection rate of miR-3127-5p mimic transfected SW480 or LOVO cells was detected by RT-qPCR. U6 was internal reference. (H-I) The expression of miR-3127-5p in Control, LINC00174, LINC00174+miR-3127-5p mimic control, LINC00174+miR-3127-5p mimic, miR-3127-5p mimic group was detected by RT-qPCR. U6 was internal reference. (J-M) Clone formation experiments were used to detect the proliferation of SW480 or LOVO cells in each group. ++
p < 0.01, +++p < 0.001 vs miR-3127-5p mimic control (MC); &&p < 0.01, &&&p < 0.001 vs Anti-lgG; **p < 0.01, ***p < 0.001 vs Control; #p < 0.05, ##p < 0.01, ###p < 0.001 vs LINC00174; ^^p < 0.01, ^^^p < 0.001 vs M.
LINC00174 Affected the Biological Characteristics of CRC Cells through miR-3127-5p
Whether LINC00174 regulates the function of CRC cells through miR-3127-5p, we have done the following experiments to verify this. First, we tested the transfection rate of miR-3127-5p mimic and showed that miR-3127-5p mimic was successfully transfected into SW480 cells or LOVO cells (
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Figure 6. LINC00174 regulated the migration and invasion of colorectal cancer (CRC) cells by targeting miR- 3127-5p.
(A-D) The cell migration distances in the CRC cell lines of Control, LINC00174, LINC00174+miR-3127-5p mimic control, LINC00174+miR-3127-5p mimic, miR-3127-5p mimic groups were determined by wound healing assay (Magnification × 100). (E-H) Transwell experiment was used to detect the invasion rate of CRC cells in each group (Magnification × 250). **
p < 0.01 vs Control; #p < 0.05, ##p < 0.01 vs LINC00174; ^^p < 0.01, ^^^p < 0.001 vs M.
LINC00174 Regulated the EMT-Related Protein of CRC Cells through miR-3127-5p/E2F7 Axis
In addition, we used miRWalk, miRDB, Starbase, Targetscan to predict miR-3127-5p target genes; and crossed the TCGA database with mRNA highly expressed in colorectal adenocarcinoma. As a result, 13 common mRNAs were obtained: GINS2, CDK10, PROX1, VAX1, ANKS6, OAS2, CIT, TMEM120B, SERPINH1, E2F7, SHBG, TKT, and NTMT1 (Fig. 7A). Among them, we selected the top two genes in the context and score in Targetscan: SHBG and E2F7 for the next step. E2F7 expression was suppressed in miR-3127-5p mimic group (
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Figure 7. E2F7 was a target gene of miR-3127-5p.
(A) The miRWalk (http://mirwalk.umm.uni-heidelberg.de/), miRDB (http://mirdb.org/), starBase, Targetscan (http://www.targetscan.org/vert_72/docs/help.html) were used to predict miR-3127- 5p target genes. The Cancer Genome Atlas (TCGA) database (http://cancergenome.nih.gov/) analyzed mRNAs that are abnormal expressed in rectal adenocarcinoma. Venn diagram was used to analyze the intersection of the data generated from the databases. (B-C) SHBG and E2F7 expressions were detected by RT-qPCR. (D-F) E2F7 bound to miR-3127-5p as predicted and verified by Targetscan and dual luciferase assay. ++
p < 0.01, +++p < 0.001 vs MC.
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Figure 8. LINC00174 regulated the EMT-related protein of CRC cells through miR-3127-5p/E2F7 axis.
(A-D) Western blot was used to detect the effects of LINC00174 and miR-3127-5p on the expressions of E2F7, E-Cadherin, NCadherin, and Vimentin in colorectal cancer (CRC) cells. *
p < 0.05, **p < 0.01, ***p < 0.001 vs Control; #p < 0.05, ##p < 0.01, ###p < 0.001 vs LINC00174; ^p < 0.05, ^^p < 0.01, ^^^p < 0.001 vs M.
Discussion
LncRNAs play various roles in the progression of CRC [18, 25]. LncRNA MALAT1 may promote the biological characteristics of CRC through its target protein AKAP-9 [26]. Studies by Zhu
LINC00174 plays a pro-cancer role by regulating different functions of cancer cells. In glioma, LINC00174 accelerated carcinogenesis of glioma by promoting cell proliferation, migration, invasion and glycolysis of glioma cells [10, 12]; moreover, LINC00174 down-regulation decreases chemoresistance to temozolomide in human glioma cells [11]. In laryngeal papilloma, LINC00174 enhanced the proliferation and apoptosis evasion of laryngeal papilloma cells by regulating miR-4500/BZW2 axis [15]. LINC00174 involved in cell migration and lipid metabolism, and is a novel prognostic factor in thymic epithelial tumors [14]. It has been reported that LINC00174 can be used as the ceRNA of miR-1910-3p, regulating the target gene TAZ to facilitate the progress of CRC [16], suggesting that LINC00174 can be used as a new drug therapy target for CRC. In this study, LINC00174 was up-regulated in CRC clinical samples and cells, and the abnormal expression of LINC00174 was significantly associated with poor prognosis in patients with CRC. In cell experiments, we found that LINC00174 promoted CRC cell viability, which is consistent with previous studies [16]. However, the difference is that heterologous overexpression of LINC00174 also accelerated the migration and invasion ability of CRC cells, and may promote EMT protein and E2F7 by competitively binding miR-3127-5p to play a cancer-promoting role in CRC. In addition, some scholars have studied the role of LINC00174 in other diseases [10, 11, 28]. Our experimental results are consistent with the report by Wang
More and more studies have shown that lncRNA can affect the binding of miRNA and its target gene by binding to the miRNA site to regulate the expression of the target gene, which is the ceRNAs regulatory network [31]. For example, LncRNA UICLM as a ceRNA of miR-215 regulates the expression of ZEB2, thereby promoting the proliferation, invasion, EMT and stem cell characteristic functions of CRC, and promoting liver metastasis of CRC [19]. Similarly, we propose to assume that LINC00174 can be used as a "molecular sponge", blocking miR-3127-5p’s post-transcriptional inhibition of downstream target genes, so that the function of target genes can be restored. Based on bioinformatics analysis, we examined the effects of LINC00174 and miR-3127-5p on the expression of E2F7, and found that LINC00174 can regulate the expression of E2F7 through miR-3127-5p in CRC cells. Interestingly, E2F7 has been shown to be highly expressed in CRC and has the promoting effect on the malignant biological function of CRC [32]. Of course, more downstream regulatory networks require further experimentation.
MiRNA plays a momentous role in the progression of CRC by up-regulating oncogenes or down-regulating oncogenes [33]. For example, the latest research found that miR-185-3p is down-regulated in CRC, and up-regulating miR-185-3p can enhance the chemotherapy sensitivity of CRC cells by targeting AQP5 [34]. Ma
In summary, the expression of LINC00174 is up-regulated and the expression of miR-3127-5p is down-regulated in CRC cells. Intervention of LINC00174 expression can play a role in promoting the malignant phenotype and EMT of CRC cells through miR-3127-5p/E2F7 axis. This study provides an experimental basis for the application of LINC00174 and miR-3127-5p in the diagnosis and molecular targeting of CRC. The next step will continue to explore the impact of LINC00174/miR-3127-5p/ E2F7 axis on CRC in vivo.
Acknowledgments
This work was supported by Ningxia Hui Autonomous Region Key R&D Program General Project[2019BEG03055].
Conflict of Interest
The authors have no financial conflicts of interest to declare.
Fig 1.
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Fig 7.
Fig 8.
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Table 1 . The correlation between the expression of LINC00174 and clinical characteristics of patients with colorectal cancer..
Clinicopathlogical features LINC00174 expression p valueLow (%) High (%) Gender Male 24(54.5) 20(45.5) 0.875 Female 19(52.8) 17(47.2) Age < 60 15(62.5) 9(37.5) 0.304 ≥ 60 28(50) 28(50) Tumor size (cm) < 4 24(77.4) 7(22.6) <0.001 ≥ 4 19(38.8) 30(61.2) Lymphovascular invasion Absent 35(66.0) 18(34.0) 0.002 Present 8(29.6) 19(70.4) Differentiation Well-moderate 22(46.8) 25(53.2) 0.137 Poor 21(63.6) 12(36.4) Depth of invasion T1+T2 23(75.8) 8(24.2) 0.004 T3+T4 20(46.8) 29(53.2) Lymph node metastasis N0 25(73.5) 9(26.5) 0.002 N1-N2 18(39.1) 28(60.1) Distant metastasis M0 33(63.5) 19(36.5) 0.0176 M1 10(35.7) 18(64.3) TNM stage Ⅰ+Ⅱ 25(69.4) 11(30.6) 0.011 Ⅲ+Ⅳ 18(40.9) 26(59.1)
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