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Biodesulfurization of Dibenzothiophene and Its Derivatives Using Resting and Immobilized Cells of Sphingomonas subarctica T7b
1Laboratory of Bioindustry, Department of Agroindustrial Technology, Faculty of Agricultural Technology, Udayana University, Bali 80-362, Indonesia , 2Laboratory of Applied Microbiology, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, 3Laboratory of Bioscience and Biotechnology, Udayana University, Bali 80-362, Indonesia, 4The University of the Air, Hokkaido Study Center, Sapporo, Hokkaido 060-0817, Japan
J. Microbiol. Biotechnol. 2013; 23(4): 473-482
Published April 28, 2013 https://doi.org/10.4014/jmb.1207.07070
Copyright © The Korean Society for Microbiology and Biotechnology.
Abstract
Keywords
References
- Bahuguna, A., M. K. Lily, A. Munjal, R. N. Singh, and K. Dangwal. 2011. Desulfurization of dibenzothiophene (DBT) by a novel strain Lysinibacillus sphaericus DMT-7 isolated from diesel contaminated soil. J. Environ. Sci. 23: 975-982.
- Chang, J. H., Y. K. Chang, K. S. Cho, and H. N. Chang. 2000. Desulfurization of model oils by resting cells of Gordonia sp. Biotechnol. Lett. 22: 193-196.
- Dursun, A. Y. and O. Tepe. 2005. Internal mass transfer effect on biodegradation of phenol by Ca-alginate immobilized Ralstonia eutropha. J. Hazard. Mater. 126: 105-111.
- Fernandes, P., P. Vidinha, T. Ferreira, H. Silvestre, J. M. S. Cabral, and D. M. F. Prazeres. 2002. Use of free and immobilized Pseudomonas putida cells for the reduction of a thiophene derivative in organic media. J. Mol. Catal. B Enzym. 19: 353361.
- Gallagher, J. R., S. S. Olson, and D. C. Stanley. 1993. Microbial desulfurization of benzothiophene: A sulfur specific pathway. FEMS Microbiol. Lett. 107: 31-36.
- Giuliano, M., C. Schiraldi, C. Maresca, V. Esposito, and M. D. Rosa. 2003. Immobilized Proteus mirabilis in poly(vinyl alcohol) cryogels for l (−)-carnitine production. Enzyme Microb. Technol. 32: 507-512.
- Gray, K A., O. S. Pogrebinsky, G. T. Mrachko, L. Xi, D. J. Monticello, and C. H. Squires. 1996. Molecular mechanisms of biocatalytic desulfurization of fossil fuels. Nat. Biotechnol. 14:1705-1709.
- Guerinik, K. and Q. Al-Mutawah. 2003. Isolation and characterization of oil-desulfurizing bacteria. World J. Microbiol. Biotechnol. 19: 941-945.
- Gunam, I. B. W., Y. Yaku, M. Hirano, K. Yamamura, F. Tomita, T. Sone, and K. Asano. 2006. Biodesulfurization of alkylated forms of dibenzothiophene and benzothiophene by Sphingomonas subarctica T7b. J. Biosci. Bioeng. 101: 322-327.
- Guobin, S., X. Jianmin, Z. Huaiying, and L. Huizhou. 2005. Deep desulfurization of hydrodesulfurized diesel oil by Pseudomonas delafieldii R-8. J. Chem. Technol. Biotechnol. 80: 420-424.
- Hernández-Maldonado, A. J. and R. T. Yang. 2003. Desulfurization of commercial liquid fuels by selective adsorption via πcomplexation with Cu(I)-Y zeolite. Ind. Eng. Chem. Res. 42:3103-3110.
- Kaufman, E. N., J. B. Harkins, and A. P. Borole. 1998. Comparison of batch stirred and electrospray reactors for biodesulfurization of dibenzothiophene in crude oil and hydrocarbon feedstocks. Appl. Biochem. Biotechnol. 73: 127144.
- Kayser, K. J., B. A. Bielaga-Jone, K. Jackowski, O. Odusan, and J. J. Kilbane II. 1993. Utilization of organosulfur compounds by axenic and mixed cultures of Rhodococcus rhodochrous IGTS8. J. Gen. Microbiol. 39: 3123-3129.
- Kayser, K. J., L. Cleveland, H. S. Park, J. H. Kwak, A. Kolhatkar, and J. J. Kilbane II. 2002. Isolation and characterization of a moderate thermophile, Mycobacterium phlei GTIS10, capable of dibenzothiophene desulfurization. Appl. Microbiol. Biotechnol. 59: 737-745.
- Kertesz, M. A. 1999. Riding the sulfur cycle metabolism of sulfonates and sulfate esters in Gram-negative bacteria. FEMS Microbiol. Rev. 24: 135-175.
- Kim, B.-H., P.-K. Shin, J.-U. Na, D.-H. Park, and S.-H. Bang. 1996. Microbial petroleum desulfurization. J. Microbiol. Biotechnol. 6: 299-308.
- Kim, H. Y., T. S. Kim, and A. B. H. Kim. 1991. Isolation and characterization of a dibenzothiophene degrading sulfate-reducing soil bacterium. J. Microbiol. Biotechnol. 1: 1-5.
- Kobayashi, M., K. Horiuchi, O. Yoshikawa, K. Hirasawa, Y. Ishii, K. Fujino, et al. 2001. Kinetic analysis of microbial desulfurization of model and light gas oils containing multiple alkyl dibenzothiophenes. Biosci. Biotechnol. Biochem. 65: 298304.
- Konishi, J., Y. Ishii, T. Onaka, K. Okumura, and M. Suzuki. 1997. Thermophilic carbon-sulfur-bond-targeted biodesulfurization. Appl. Environ. Microbiol. 63: 3164-3169.
- Li, F., P. Xu, J. Feng, L. Meng, Y. Zheng, L. Luo, and C. Ma. 2005. Microbial desulfurization of gasoline in a Mycobacterium goodie X7B immobilized-cell system. Appl. Environ. Microbiol. 71: 276-281.
- Li, Q., C. Kang, and C. Zhang. 2005. Waste water produced from an oilfield and continuous treatment with an oil-degrading bacterium. Process Biochem. 40: 873-877.
- Lijun, X., W. Bochu, L. Zhimin, D. Chuanren, W. Qinghong, and L. Liu. 2005. Linear alkyl benzene sulfonate (LAS) degradation by immobilized Pseudomonas aeroginosa under low intensity ultrasound. Colloids Surf. B Biointerfaces 40: 25-29.
- Lu, J., T. Nakajima-Kambe, T. Shigeno, A. Ohbo, N. Nomura, and T. Nakahara. 1999. Biodegradation of dibenzothiophene and 4,6-dimethyldibenzothiophene by Sphingomonas pauchimobilis strain TZS-7. J. Biosci. Bioeng. 88: 293-299.
- Luo, M. F., J. M. Xing, Z. X. Gou, S. Li, H. Z. Liu, and J. Y. Chen. 2003. Desulfurization of dibenzothiophene by lyophilized cells of Pseudomonas delafieldii R-8 in the presence of dodecane. Biochem. Eng. J. 13: 1-6.
- Maghsoudi, S., A. Kheirolomoom, M. Vossoughi, E. Tanaka, and S. Katoh. 2001. Biodesulfurization of hydrocarbon by Rhodococcus sp. strain P32C1. Biochem. Eng. J. 8: 151-156.
- Matsui, T., K. Hirasawa, K. Koizumi, K. Maruhashi, and R. Kurane. 2001. Optimization of the copy of number of dibenzothiophene desulfurizing genes to increase the desulfurization activity of recombinant Rhodococcus sp. Biotechnol. Lett. 23: 1715-1718.
- Naito, M., T. Kawamoto, K. Fujino, M. Kobayashi, K. Maruhashi, and A. Tanaka. 2001. Long-term repeated biodesulfurization by immobilized Rhodococcus erythopolis KA2-5-1 cells. Appl. Microbiol. Biotechnol. 55: 374-378.
- Noda, K., K. Watanabe, and K. Maruhashi. 2003. Isolation of a recombinant desulfurizing 4,6-dipropyl dibenzothiophene in ntetradecane. J. Biosci. Bioeng. 95: 354-360.
- Ohshiro, T., T. Hirata, and Y. Izumi. 1996. Desulfurization of dibenzothiophene derivates by whole cells of Rhodococcus erythopolis H-2. FEMS Microbiol. Lett. 142: 65-70.
- Omori, T., L. Monna, Y. Saiki, and T. Kodama. 1992. Desulfurization of dibenzothiophene by Corynebacterium sp. strain SY1. Appl. Environ. Microbiol. 58: 911-915.
- Park, S. J., I.-S. Lee, Y. K. Chang, and S. Y. Lee. 2003. Desulfurization of dibenzothiophene and diesel oil by metabolically engineered Escherichia coli. J. Microbiol. Biotechnol. 13: 578583.
- Schiller, J. E. and D. R. Mathiason 1997. Separation method for coal-derived solids and heavy liquids. Anal. Chem. 49: 12251228
- Silveira, S. T., S. Gemelli, J. Segalin, and A. Brandelli. 2012. Immobilization of keratinolytic metalloprotease from Chryseobacterium sp. strain kr6 on glutaraldehyde-activated chitosan. J. Microbiol. Biotechnol. 22: 818-825.
- Szczesna-Antczak, M., T. Antczak, and S. Bielecki. 2004. Stability of extracellular proteinase productivity by Bacillus subtilis cells immobilized in PVA-cryogel. Enzyme Microb. Technol. 34: 168-176.
- Tanaka, Y., T. Matsui, J. Konishi, K. Maruhashi, and R. Kurane. 2002. Biodesulfurization of benzothiophene and dibenzothiophene by a newly isolated Rhodococcus strain. Appl. Microbiol. Biotechnol. 59: 325-328.
- Watanabe, K., K. Noda, J. Konishi, and K. Maruhashi. 2003. Desulfurization of 2,4,6,8-tetraethyl dibenzothiophene by recombinant Mycobacterium sp. strain MR65. Biotechnol. Lett. 25: 1451-1456.
Related articles in JMB

Article
Research article
J. Microbiol. Biotechnol. 2013; 23(4): 473-482
Published online April 28, 2013 https://doi.org/10.4014/jmb.1207.07070
Copyright © The Korean Society for Microbiology and Biotechnology.
Biodesulfurization of Dibenzothiophene and Its Derivatives Using Resting and Immobilized Cells of Sphingomonas subarctica T7b
Ida Bagus Wayan Gunam 1, Kenta Yamamura 2, I Nengah Sujaya 3, Nyoman Semadi Antara 1, Wayan Redi Aryanta 1, Michiko Tanaka 2, Fusao Tomita 4, Teruo Sone 2 and Kozo Asano 2*
1Laboratory of Bioindustry, Department of Agroindustrial Technology, Faculty of Agricultural Technology, Udayana University, Bali 80-362, Indonesia , 2Laboratory of Applied Microbiology, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, 3Laboratory of Bioscience and Biotechnology, Udayana University, Bali 80-362, Indonesia, 4The University of the Air, Hokkaido Study Center, Sapporo, Hokkaido 060-0817, Japan
Abstract
The desulfurization ability of Sphingomonas subarctica
T7b was evaluated using resting and immobilized cells
with dibenzothiophene (DBT), alkyl DBTs, and commercial
light gas oil (LGO) as the substrates. The resting cells of
S. subarctica T7b degraded 239.2 mg of the initial 250 mg
of DBT/l (1.36 mM) within 24 h at 27oC, while 127.5 mg of
2-hydroxybiphenyl (2-HBP)/l (0.75 mM) was formed,
representing a 55% conversion of the DBT. The DBT
desulfurization activity was significantly affected by the
aqueous-to-oil phase ratio. In addition, the resting cells of
S. subarctica T7b were able to desulfurize alkyl DBTs with
long alkyl chains, although the desulfurization rate
decreased with an increase in the total carbon number of
the alkylated DBTs. LGO with a total sulfur content of
280 mg/l was desulfurized to 152 mg/l after 24 h of reaction.
Cells immobilized by entrapment with polyvinyl alcohol
(PVA) exhibited a high DBT desulfurization activity,
including repeated use for more than 8 batch cycles
without loss of biodesulfurization activity. The stability of
the immobilized cells was better than that of the resting
cells at different initial pHs, higher temperatures, and for
DBT biodesulfurization in successive degradation cycles.
The immobilized cells were also easily separated from the
oil and water phases, giving this method great potential
for oil biodesulfurization.
Keywords: Biodesulfurization, dibenzothiophene, resting cells, immobilized cells, Sphingomonas subarctica
References
- Bahuguna, A., M. K. Lily, A. Munjal, R. N. Singh, and K. Dangwal. 2011. Desulfurization of dibenzothiophene (DBT) by a novel strain Lysinibacillus sphaericus DMT-7 isolated from diesel contaminated soil. J. Environ. Sci. 23: 975-982.
- Chang, J. H., Y. K. Chang, K. S. Cho, and H. N. Chang. 2000. Desulfurization of model oils by resting cells of Gordonia sp. Biotechnol. Lett. 22: 193-196.
- Dursun, A. Y. and O. Tepe. 2005. Internal mass transfer effect on biodegradation of phenol by Ca-alginate immobilized Ralstonia eutropha. J. Hazard. Mater. 126: 105-111.
- Fernandes, P., P. Vidinha, T. Ferreira, H. Silvestre, J. M. S. Cabral, and D. M. F. Prazeres. 2002. Use of free and immobilized Pseudomonas putida cells for the reduction of a thiophene derivative in organic media. J. Mol. Catal. B Enzym. 19: 353361.
- Gallagher, J. R., S. S. Olson, and D. C. Stanley. 1993. Microbial desulfurization of benzothiophene: A sulfur specific pathway. FEMS Microbiol. Lett. 107: 31-36.
- Giuliano, M., C. Schiraldi, C. Maresca, V. Esposito, and M. D. Rosa. 2003. Immobilized Proteus mirabilis in poly(vinyl alcohol) cryogels for l (−)-carnitine production. Enzyme Microb. Technol. 32: 507-512.
- Gray, K A., O. S. Pogrebinsky, G. T. Mrachko, L. Xi, D. J. Monticello, and C. H. Squires. 1996. Molecular mechanisms of biocatalytic desulfurization of fossil fuels. Nat. Biotechnol. 14:1705-1709.
- Guerinik, K. and Q. Al-Mutawah. 2003. Isolation and characterization of oil-desulfurizing bacteria. World J. Microbiol. Biotechnol. 19: 941-945.
- Gunam, I. B. W., Y. Yaku, M. Hirano, K. Yamamura, F. Tomita, T. Sone, and K. Asano. 2006. Biodesulfurization of alkylated forms of dibenzothiophene and benzothiophene by Sphingomonas subarctica T7b. J. Biosci. Bioeng. 101: 322-327.
- Guobin, S., X. Jianmin, Z. Huaiying, and L. Huizhou. 2005. Deep desulfurization of hydrodesulfurized diesel oil by Pseudomonas delafieldii R-8. J. Chem. Technol. Biotechnol. 80: 420-424.
- Hernández-Maldonado, A. J. and R. T. Yang. 2003. Desulfurization of commercial liquid fuels by selective adsorption via πcomplexation with Cu(I)-Y zeolite. Ind. Eng. Chem. Res. 42:3103-3110.
- Kaufman, E. N., J. B. Harkins, and A. P. Borole. 1998. Comparison of batch stirred and electrospray reactors for biodesulfurization of dibenzothiophene in crude oil and hydrocarbon feedstocks. Appl. Biochem. Biotechnol. 73: 127144.
- Kayser, K. J., B. A. Bielaga-Jone, K. Jackowski, O. Odusan, and J. J. Kilbane II. 1993. Utilization of organosulfur compounds by axenic and mixed cultures of Rhodococcus rhodochrous IGTS8. J. Gen. Microbiol. 39: 3123-3129.
- Kayser, K. J., L. Cleveland, H. S. Park, J. H. Kwak, A. Kolhatkar, and J. J. Kilbane II. 2002. Isolation and characterization of a moderate thermophile, Mycobacterium phlei GTIS10, capable of dibenzothiophene desulfurization. Appl. Microbiol. Biotechnol. 59: 737-745.
- Kertesz, M. A. 1999. Riding the sulfur cycle metabolism of sulfonates and sulfate esters in Gram-negative bacteria. FEMS Microbiol. Rev. 24: 135-175.
- Kim, B.-H., P.-K. Shin, J.-U. Na, D.-H. Park, and S.-H. Bang. 1996. Microbial petroleum desulfurization. J. Microbiol. Biotechnol. 6: 299-308.
- Kim, H. Y., T. S. Kim, and A. B. H. Kim. 1991. Isolation and characterization of a dibenzothiophene degrading sulfate-reducing soil bacterium. J. Microbiol. Biotechnol. 1: 1-5.
- Kobayashi, M., K. Horiuchi, O. Yoshikawa, K. Hirasawa, Y. Ishii, K. Fujino, et al. 2001. Kinetic analysis of microbial desulfurization of model and light gas oils containing multiple alkyl dibenzothiophenes. Biosci. Biotechnol. Biochem. 65: 298304.
- Konishi, J., Y. Ishii, T. Onaka, K. Okumura, and M. Suzuki. 1997. Thermophilic carbon-sulfur-bond-targeted biodesulfurization. Appl. Environ. Microbiol. 63: 3164-3169.
- Li, F., P. Xu, J. Feng, L. Meng, Y. Zheng, L. Luo, and C. Ma. 2005. Microbial desulfurization of gasoline in a Mycobacterium goodie X7B immobilized-cell system. Appl. Environ. Microbiol. 71: 276-281.
- Li, Q., C. Kang, and C. Zhang. 2005. Waste water produced from an oilfield and continuous treatment with an oil-degrading bacterium. Process Biochem. 40: 873-877.
- Lijun, X., W. Bochu, L. Zhimin, D. Chuanren, W. Qinghong, and L. Liu. 2005. Linear alkyl benzene sulfonate (LAS) degradation by immobilized Pseudomonas aeroginosa under low intensity ultrasound. Colloids Surf. B Biointerfaces 40: 25-29.
- Lu, J., T. Nakajima-Kambe, T. Shigeno, A. Ohbo, N. Nomura, and T. Nakahara. 1999. Biodegradation of dibenzothiophene and 4,6-dimethyldibenzothiophene by Sphingomonas pauchimobilis strain TZS-7. J. Biosci. Bioeng. 88: 293-299.
- Luo, M. F., J. M. Xing, Z. X. Gou, S. Li, H. Z. Liu, and J. Y. Chen. 2003. Desulfurization of dibenzothiophene by lyophilized cells of Pseudomonas delafieldii R-8 in the presence of dodecane. Biochem. Eng. J. 13: 1-6.
- Maghsoudi, S., A. Kheirolomoom, M. Vossoughi, E. Tanaka, and S. Katoh. 2001. Biodesulfurization of hydrocarbon by Rhodococcus sp. strain P32C1. Biochem. Eng. J. 8: 151-156.
- Matsui, T., K. Hirasawa, K. Koizumi, K. Maruhashi, and R. Kurane. 2001. Optimization of the copy of number of dibenzothiophene desulfurizing genes to increase the desulfurization activity of recombinant Rhodococcus sp. Biotechnol. Lett. 23: 1715-1718.
- Naito, M., T. Kawamoto, K. Fujino, M. Kobayashi, K. Maruhashi, and A. Tanaka. 2001. Long-term repeated biodesulfurization by immobilized Rhodococcus erythopolis KA2-5-1 cells. Appl. Microbiol. Biotechnol. 55: 374-378.
- Noda, K., K. Watanabe, and K. Maruhashi. 2003. Isolation of a recombinant desulfurizing 4,6-dipropyl dibenzothiophene in ntetradecane. J. Biosci. Bioeng. 95: 354-360.
- Ohshiro, T., T. Hirata, and Y. Izumi. 1996. Desulfurization of dibenzothiophene derivates by whole cells of Rhodococcus erythopolis H-2. FEMS Microbiol. Lett. 142: 65-70.
- Omori, T., L. Monna, Y. Saiki, and T. Kodama. 1992. Desulfurization of dibenzothiophene by Corynebacterium sp. strain SY1. Appl. Environ. Microbiol. 58: 911-915.
- Park, S. J., I.-S. Lee, Y. K. Chang, and S. Y. Lee. 2003. Desulfurization of dibenzothiophene and diesel oil by metabolically engineered Escherichia coli. J. Microbiol. Biotechnol. 13: 578583.
- Schiller, J. E. and D. R. Mathiason 1997. Separation method for coal-derived solids and heavy liquids. Anal. Chem. 49: 12251228
- Silveira, S. T., S. Gemelli, J. Segalin, and A. Brandelli. 2012. Immobilization of keratinolytic metalloprotease from Chryseobacterium sp. strain kr6 on glutaraldehyde-activated chitosan. J. Microbiol. Biotechnol. 22: 818-825.
- Szczesna-Antczak, M., T. Antczak, and S. Bielecki. 2004. Stability of extracellular proteinase productivity by Bacillus subtilis cells immobilized in PVA-cryogel. Enzyme Microb. Technol. 34: 168-176.
- Tanaka, Y., T. Matsui, J. Konishi, K. Maruhashi, and R. Kurane. 2002. Biodesulfurization of benzothiophene and dibenzothiophene by a newly isolated Rhodococcus strain. Appl. Microbiol. Biotechnol. 59: 325-328.
- Watanabe, K., K. Noda, J. Konishi, and K. Maruhashi. 2003. Desulfurization of 2,4,6,8-tetraethyl dibenzothiophene by recombinant Mycobacterium sp. strain MR65. Biotechnol. Lett. 25: 1451-1456.