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Diversity of Root-Associated Paenibacillus spp. in Winter Crops from the Southern Part of Korea
Laboratory of Microbial Genomics, Genome Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 305-333, Republic of Korea, 1Department of Applied Biology and Environmental Sciences, College of Agriculture and Life Sciences, Gyeongsang National University, Jinju 660-701, Republic of Korea
J. Microbiol. Biotechnol. 2005; 15(6): 1286-1298
Published December 28, 2005
Copyright © The Korean Society for Microbiology and Biotechnology.
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J. Microbiol. Biotechnol. 2005; 15(6): 1286-1298
Published online December 28, 2005
Copyright © The Korean Society for Microbiology and Biotechnology.
Diversity of Root-Associated Paenibacillus spp. in Winter Crops from the Southern Part of Korea
Cheong, Hoon , Soo-Young Park , Choong-Min Ryu , JiHyun F. Kim , Seung-Hwan Park and Chang Seuk Park 1*
Laboratory of Microbial Genomics, Genome Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 305-333, Republic of Korea, 1Department of Applied Biology and Environmental Sciences, College of Agriculture and Life Sciences, Gyeongsang National University, Jinju 660-701, Republic of Korea
Abstract
The genus Paenibacillus is a new group of bacilli separated from the genus Bacillus, and most of species have been isolated from soil. In the present study, we collected 450 spore-forming bacilli from the roots of winter crops, such as barley, wheat, onion, green onion, and Chinese cabbage, which were cultivated in the southern part of Korea. Among these 450 isolates, 104 Paenibacillus-like isolates were selected, based on their colony shape, odor, color, and endospore morphology, and 41 isolates were then finally identified as Paenibacillus spp. by 16S rDNA sequencing. Among the 41 Paenibacillus isolates, 23 were classified as P. polymyxa, a type species of the genus Paenibacillus, based on comparison of the 16S rDNA sequences with those of 32 type strains of the genus Paenibacillus from the GenBank database. Thirty-five isolates among the 41 Paenibacillus isolates exhibited antagonistic activity towards plant fungal and bacterial pathogens, whereas 24 isolates had a significant growth-enhancing effect on cucumber seedlings, when applied to the seeds. An assessment of the root-colonization capacity under gnotobiotic conditions revealed that all 41 isolates were able to colonize cucumber roots without any significant difference. Twenty-one of the Paenibacillus isolates were shown to contain the nifH gene, which is an indicator of
Keywords: Paenibacillus, rhizosphere, 16S rDNA, PGPR, nitrogen-fixation, BOX-PCR