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Research article
Secretory Production of the Hericium erinaceus Laccase from Saccharomyces cerevisiae
1Synthetic Biology Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, Republic of Korea
2Department of Biosystems and Bioengineering, KRIBB School of Biotechnology, Korea National University of Science and Technology (UST), Daejeon 34113, Republic of Korea
3Jeonbuk Branch Institute, Korea Research Institute of Bioscience and Biotechnology, Jeongeup 56212, Republic of Korea
4Cellapy Bio Inc., Daejeon 34141, Republic of Korea
J. Microbiol. Biotechnol. 2024; 34(4): 930-939
Published April 28, 2024 https://doi.org/10.4014/jmb.2312.12043
Copyright © The Korean Society for Microbiology and Biotechnology.
Abstract
Keywords
Graphical Abstract
Introduction
Plant biomass, a pivotal renewable resource for energy and biochemistry, plays a critical role in achieving carbon neutrality [1]. The conversion of plant biomass into platform molecules, facilitated by depolymerization and fermentation, is essential to make this process cost-effective, compensating for fossil fuel production and reducing greenhouse gas emissions [2]. Biorefining, a transformative process, converts plant biomass—primarily composed of cellulose, hemicellulose, and lignin-into a spectrum of marketable products and energy. While cellulose and hemicellulose are relatively easy to decompose, the robust depolymerization of lignin, owing to its rigidity and recalcitrance, necessitates advanced methods such as pyrolysis, chemical catalysis, and the involvement of natural lignin-degrading microorganisms and enzymes [3, 4].
Natural lignin-degrading microorganisms, such as fungi and bacteria, or enzymes, such as laccase (EC 1.10.3.2), lignin peroxidase (EC 1.11.1.14), manganese peroxidase (EC 1.11.1.13), and versatile peroxidase (EC 1.11.1.16), are also used to degrade lignin under mild reaction conditions [5]. Among the various lignin-degrading enzymes, laccases stand out as multicopper oxidases with the ability to oxidize a diverse range of phenolic and non-phenolic compounds [6]. Laccase is widely distributed in plants, insects, and bacteria and is involved in lignin biosynthesis by cleaving the C-C and C-O bonds of lignin. In fungi, including mushrooms, laccases play a role in sporulation, fruiting body formation, melanin synthesis, plant pathogenicity, and in vivo degradation [7]. Many fungal laccase genes have been discovered, heterologously expressed, and characterized. However, more effective enzymes must be identified and produced.
While previous efforts have explored strategies like exploring new fungal strains and optimizing growth conditions for laccase production, our research centers on a novel laccase from
In this study, novel laccases were identified in
Materials and Methods
Strains, Media, and Chemicals
Laccase Activity Assay
The laccase activity assay was performed as previously described with slight modifications [8]. Laccase activity was determined by oxidation of ABTS at 30°C as monitored through an absorbance increment at 420 nm in phosphate buffer. To analyze the oxidative activity of the secreted laccase, 50 μl of culture supernatant was added to 950 μl of 0.2 mM citrate phosphate buffer containing 2.0 mM ABTS.
Purification of Laccase Enzyme from Mushroom and N-Terminus Sequence Analysis
After harvesting the fruiting body of
Secretion of H. erinaceus Laccase in S. cerevisiae
To produce recombinant laccase proteins, yeast codon-optimized laccase genes were synthesized by Bioneer (Republic of Korea). DNA fragments were amplified via PCR using the synthesized DNA as a template and an appropriate primer set (Table 1). Each amplicon was amplified again using homologous flank forward and reverse (HF and HR) primers and then cloned into YGa-TFPn shuttle vector using in vivo recombination [19]. Transformants were selected on SD-Ura plates at 30°C and cultured in test tubes containing 3 ml of YPD broth at 30°C, 200 rpm for 48 h. Then, 1 ml culture supernatant was concentrated via acetone precipitation, mixed with sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) sample buffer (Bio-Rad, USA), analyzed on 12% Tris-glycine gels under denaturing conditions, and stained with Coomassie Brilliant Blue R-250 solution.
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Table 1 . Primers used in this study to construct HeLac4 tag vectors.
Amplicon Primer Sequence (5’ to 3’) HeLac4 oF1 GAATTTTTGAAAATTCAAGAATTCATGCGTCCCTCGTGCTTGG HeLac4 F1 CTCGCCTTAGATAAAAGAGCGATTGGCCCGGTCGGCG HeLac4a Ra1 GTGATGGTGATGGTGATGCATCAGCGCGCGCGCACACC HeLac4b Rb1 GTGATGGTGATGGTGATGTCTCCAAAACGATACAGAACG HeLac4c Rc1 GTGATGGTGATGGTGATGCTGCCCTTGCGTCTCGTTCTTG HeLac4d Rd1 GTGATGGTGATGGTGATGAACCACAAGAAAGGTCACGTACG HeLac4 HF GGCCGCCTCGGCCTCTGCTGGCCTCGCCTTAGATAAAAGA HeLac4 HR GTCATTATTAAATATATATATATATATATTGTCACTCCGTTCAAGTCGAC HeLac4His HHR GTCATTATTAAATATATATATATATATATTGTCACTCCGTTCAAGTCGACTTAG TGATGGTGATGGTGATG
Purification of Recombinant Laccase
Fed-batch fermentation was performed to produce recombinant laccase, as described previously [19]. A seed culture for fermentation was prepared in a 250 ml flask containing 50 ml of SD-Ura broth at 30°C. After 24 h of growth, the seed culture was transferred to 200 ml of YPD broth to prepare the preculture. In total, 250 ml of cultured seeds were inoculated into a 5 L jar fermenter (Kobiotech, Republic of Korea) with 1.75 L of the main medium (comprising 3% yeast extract, 1.5% peptone, and 2% glucose). During fermentation, the feeding medium (comprising 5% yeast extract and 30% glucose) was added manually to maintain the glucose concentration at approximately 1%, and the pH was adjusted to 5.5 using NH4OH. After fermentation, the culture supernatant was harvested using centrifugation at 10,000 ×
Enzyme Characterization
The effects of various inhibitors and organic solvents on laccase activity were determined by adding the compounds at the indicated concentrations to the assay mixture and measuring the residual activity under standard assay conditions. The effects of pH and temperature on the enzyme activity and stability were measured using 2 mM ABTS as the substrate. The optimum pH was calculated by measuring the activity at 40°C after incubation for 10 min over the pH range 2.0–9.0 using as buffers 0.1 M phosphate (pH 2.0), 0.1 M citrate-phosphate (pH 3.0–5.0), 0.1 M phosphate (pH 6.0–7.0), and 0.1 M Tris-HCl (pH 7.0–9.0). The thermostability of the laccase was estimated after 2 h incubation of the purified enzymes at temperatures ranging from 30–70°C and pH 7.0, and the residual activity under standard assay conditions was analyzed. The effects of metal ions and inhibitors on laccase activity were determined using 2 mM ABTS as the substrate in 50 mM sodium acetate buffer (pH 5.0) in the presence of metal ions or inhibitors at appropriate concentrations. All assays were performed in triplicate.
Depolymerization of Guaiacylglycerol-β-guaiacyl ether or Kraft lignin with HeLac4c
Guaiacylglycerol-β-guaiacyl ether (GGE), its degradation product vanillin, and kraft lignin were analyzed using high-performance liquid chromatography (HPLC, Agilent 1200 HPLC system, USA). The HPLC procedure was performed by injecting fractions using a reverse-phase Eclipse XDB-C18 column (4.6 × 150 mm, 5 μm, Agilent). Gradient separation was performed from distilled water (solvent A) to methanol (solvent B) using the following conditions: flow rate 1.0 ml/min, column temperature 25°C, time 0 min-5% B, 5 min-25% B, 10 min-40% B, 30 min-50% B, time 35 min-100% B. Using a UV detector at 280 nm, authentic GGE, and vanillin were detected at 13.522 and 10.497 min, respectively. Kraft lignin was detected as multiple peaks.
Results
Partial Purification of the Extracellular Laccase Proteins
Mushroom
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Fig. 1. Phylogenetic analysis (A) and sequence alignment (B) of
Hericium erinaceus laccases HeLac4a, b, c, and d with other known laccases. The conserved sequences are marked with black or gray boxes.
Identification and Expression of Iso-Type Laccases
Based on the N-terminal amino acid sequence, the laccase-coding cDNAs identified in our previous RNA-seq mapping as four isotranscripts for HeLac4a, b, c, and d, among the putative laccase-coding genes in the mushroom genome were 1464, 1305, 1569, and 1470 bp in length, encoding 487, 434, 522, and 489 amino acid residues, respectively. To identify the optimal secretion fusion partner, codon-optimized laccase genes for HeLac4a, b, c, and d were combined with a previously developed translational fusion partners (TFP) library (Table 2) and secreted by
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Table 2 . List of 20 TFPs.
TFP Number Gene Name Lengtha Signal peptide Lengtha Characteristicsb 1 MFα 93 19 Pre-pro SS 2 YAR066 118 23 Pre-SS, N-gly, Ser, Ala-rich, GPI 3 YFR026c 130 18 Pre-SS, N-gly, TMD 4 CIS3 117 21 Pre-pro-SS, O-gly, PIR 5 SRL1 66 20 Pre-SS, N-gly, O-gly, Ser, Thr-rich 6 SIM1-1 97 19 Pre-SS, N-gly, O-gly, Ser, Ala-rich, SUN family 7 OST3 199 22 Pre-SS, O-gly 8 Yml190w 77 20 Pre-SS, N-gly, internal repeats, CWP 9 EMP24 94 19 Pre-SS, TMD 10 HSP150 174 18 Pre-pro-SS 11 ECM33 68 19 Pre-SS, GPI 12 ATG27 157 19 Pre-SS, TMD 13 UTH1 98 17 Pre-SS, SUN family, Ser-rich 14 BGL2 91 23 Pre-SS 15 SCW4 124 19 Pre-SS, CWP 16 CCW12 138 18 Pre-SS, CWP 17 FIT3 176 18 Pre-SS, GPI 18 YGP1 138 19 Pre-SS, N-gly, CWP 19 CCW14 115 22 Pre-SS, CWP 20 SED1 170 18 Pre-SS, GPI anumber of amino acids
bPre-SS, pre-secretion signal; Pre-pro-SS, pre-pro secretion signal; N-gly, N-glycosylation site; O-gly, o-glycosylation site; GPI, glycosyl phosphatidylinositol anchor protein; PIR, protein internal repeats; CWP, cell wall protein; TMD, transmembrane domain.
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Fig. 2. Translational fusion partner plasmid construction diagram for identification of optimum secretion fusion partner (A) and analysis of secretion of HeLac4c by translational fusion partners (TFPs) through SDS-PAGE (upper image) and western blot analysis (lower image) detected with anti-His antibody (B).
Characterization of HeLac4c Secreted from S. cerevisiae
According to the primary amino acid sequence, eight potential N-glycosylation sites (Asn-X-Ser/Thr, where X is any amino acid except proline) were identified with NetNGlyc (https://services.healthtech.dtu.dk/services/NetNGlyc-1.0/) [28] within the catalytic domain (Fig. 3A) and seven potential O-glycosylation sites were predicted with NetOGlyc. The protein secreted by T18 was purified and resolved using SDS-PAGE. In the absence of Endo H, heavily smeared bands were observed. However, upon treatment with Endo H, a clear band at approximately 70 kDa and a smeared band at approximately 55 kDa were identified (Fig. 3B). The glycoprotein nature of HeLac4c, which affects its molecular mass, was further emphasized through ABTS analysis, which showed a 25% loss of activity after removing glycosylation with Endo H, indicating that N-glycosylation of laccase could affect its binding affinity to substrates and the catalytic rate of laccase [29]. The optimum pH for ABTS oxidation was pH 4.4 (Fig. 3C), and that for syringaldazine was pH 5.0. Similar optimum pH values for ABTS and syringaldazine have been reported for other white laccases [7]. The enzyme stability after 2 h exposure at various temperatures revealed 75% retained activity until 40°C and rapid loss of activity after 50°C (Fig. 3D).
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Fig. 3. Characterization of the secreted recombinant HeLac4c enzyme.
Identification of protein N-glycosylation sites and copper binding sites of laccases expressed in
S. cerevisiae (A). SDS-PAGE stained with Coomassie Brilliant Blue R-250 of HeLac4c with and without Endo H treatment for the removal of N-glycosylation (B). Effect of pH on oxidation activities of recombinant laccase (C) and stability of HeLac4c after pretreatment for 2 h at 10−80°C (D) Activity assays of recombinant HeLac4c enzyme were performed by oxidation of ABTS in 100 mM citrate-phosphate buffer at pH 4.0.
The enzyme activity of HeLac4c was measured using ABTS as the substrate at different concentrations of metal salt (0–10 mM) at pH 4.0 and 25°C (Table 3). In general, enzyme activity increased in the presence of metal salts. When 5 or 10 mM Cu2+ ions were added to the buffer, the ABTS oxidative activity increased by 50% compared with that in the absence of Cu2+. The addition of 10 mM metal ions such as Na+, K+, Mg2+, or Zn2+ increased the activity from 5 to 65%. In particular, when Na+ was added, the activity increased by up to 65%. For Zn2+ and Cr3+, the activity was higher when 5 mM were added than when 10 mM were added. However, metal ions such as Fe2+ and Al+ significantly inhibited HeLac4c activity. The enhancement of activity by the addition of metal ions suggests their potential use in industrial processes where metal ion exposure is expected, despite the potential limitations posed by specific metal ions such as Fe2+ and Al+.
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Table 3 . Effects of metal ions on the ABTS oxidation activities of HeLac4c.
Metal salt Concentration (mM) Relative activity (%) None – 100 Na2SO4 5 125 10 165 K2SO4 5 120 10 125 MgSO4 5 115 10 120 FeSO4 5 5 10 −1 ZnSO4 5 110 10 105 AlK(SO4)2 5 60 10 60 CrK(SO4)2 5 145 10 100 CuSO4 5 150 10 150
We studied the effects of four known laccase inhibitors on HeLac4 activity (Table 4). The enzyme was incubated with different compounds prior to activity measurements. Almost complete inhibition of HeLac4c activity was observed in 1 mM sodium azide (NaN3), a metalloenzyme inhibitor. L-cysteine at 10 mM, which affects disulfide bond cleavage, inhibited more than 90% of the activity. Ethylenediaminetetraacetic acid (EDTA), a well-known heavy metal ion-chelating agent, inhibited the activity of HeLac4c at a concentration of 25 mM. Hydrogen peroxide (H2O2) showed the least inhibitory effect, as the enzyme retained over 50% of its original activity even at 50 mM H2O2. This high resistance to hydrogen peroxide may be attributed to structural adaptations of laccase, enabling its function as an oxidative catalyst. H2O2 is a potent oxidizing agent in the presence of Cu [30].
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Table 4 . Effects of inhibitors on the oxidation activities of HeLac4c.
Inhibitor Concentration (mM) Relative activity (%) None – 100 Dithiothreitol 1 96.0 5 92.5 10 75.9 EDTA 1 100 5 79.9 10 52.3 L-Cysteine 1 100 5 26.6 10 6.0 NaN3 0.01 100 0.1 26.6 1 7.0
Biodegradation of GGE with HeLac4c
Guaiacylglycerol-β-guaiacyl ether (GGE), a lignin model compound, was subjected to laccase oxidation by purified HeLac4c. Two mM GGE was treated with no enzyme (blue line in Fig. 4A), HeLac4c (red), or commercial TvLac (green) to test the biodegradation of laccase at pH 4 and analyzed using HPLC. No significant changes were observed when ABTS was not used. However, with ABTS, GGE (retention time of 18 min) was converted to GGE polymers (peaks with a retention time of ≥20 min), as previously reported [8, 31]. Trace amounts of GGE fragments (peaks with retention times between 10 and 15 min) were produced after the complete conversion of GGE to GGE polymers. Some GGE polymers formed from oxidation by HeLac4c were detected using HPLC; however, owing to the hydrophobicity of the polymers, they precipitated from the reaction solution (Fig. 4B). In addition, although HeLac4c was also incubated with Kraft lignin, no depolymerization peak was detected in HPLC analysis.
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Fig. 4. 2 mM guaiacylglycerol-β-guaiacyl ether (GGE) was treated with no enzyme (blue), HeLac4c (red), and commercial TvLac (green) for testing biodegradation of laccase in pH 4 and analyzed with highperformance liquid chromatography (HPLC) without (A) and with addition of 1mM ABTS (B).
GGE retention time was approximately 18 minutes, and GGE polymers at 31 and 33 minutes were observed with the addition of 1 mM ABTS. GGE depolymerized unidentified fragmented GGE monomers at 11–14 min.
Discussion
Four isotypes of HeLac4 were isolated from the
Recently, the secretion of lignin depolymerization peroxidases from
The significance of our study lies in the discovery of a novel lignolytic enzyme and the adept ability to selectively secrete the enzyme within a model organism such as
In summary, the translational fusion partner system facilitated the successful expression of novel
Author Contributions
Jin Kang: Data curation, Methodology, Writing—review, and editing. Thuat Van La: Methodology, Validation, Formal analysis. Mi-Jin Kim: Methodology, Validation, Formal analysis. Jung-Hoon Bae: Supervision. Bong Hyun Sung: Supervision, Writing—review, and editing, and funding acquisition. Seonghoon Kim: Supervision, Writing—review and editing. Jung-Hoon Sohn: Conceptualization, Supervision, Funding acquisition.
Acknowledgments
This work was supported by the National Research Foundation of Korea (NRF) grants (NRF-2022M3J5A1056169, 2021M3A9I5023254, 2019R1A2C1090726, and 2018M3A9H3024746), a National Research Council of Science & Technology grant (No. CAP20024-200) of the Korean government (MSIT) and the Research Initiative Program of KRIBB.
Conflict of Interest
The authors have no financial conflicts of interest to declare.
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Related articles in JMB
Article
Research article
J. Microbiol. Biotechnol. 2024; 34(4): 930-939
Published online April 28, 2024 https://doi.org/10.4014/jmb.2312.12043
Copyright © The Korean Society for Microbiology and Biotechnology.
Secretory Production of the Hericium erinaceus Laccase from Saccharomyces cerevisiae
Jin Kang1,2†, Thuat Van La2,3†, Mi-Jin Kim1, Jung-Hoon Bae1, Bong Hyun Sung1,2*, Seonghun Kim2,3*, and Jung-Hoon Sohn1,2,4*
1Synthetic Biology Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, Republic of Korea
2Department of Biosystems and Bioengineering, KRIBB School of Biotechnology, Korea National University of Science and Technology (UST), Daejeon 34113, Republic of Korea
3Jeonbuk Branch Institute, Korea Research Institute of Bioscience and Biotechnology, Jeongeup 56212, Republic of Korea
4Cellapy Bio Inc., Daejeon 34141, Republic of Korea
Correspondence to:Bong Hyun Sung, bhsung@kribb.re.kr
†These authors contributed equally to this study.
Abstract
Mushroom laccases play a crucial role in lignin depolymerization, one of the most critical challenges in lignin utilization. Importantly, laccases can utilize a wide range of substrates, such as toxicants and antibiotics. This study isolated a novel laccase, named HeLac4c, from endophytic white-rot fungi Hericium erinaceus mushrooms. The cDNAs for this enzyme were 1569 bp in length and encoded a protein of 523 amino acids, including a 20 amino-acid signal peptide. Active extracellular production of glycosylated laccases from Saccharomyces cerevisiae was successfully achieved by selecting an optimal translational fusion partner. We observed that 5 and 10 mM Ca2+, Zn2+, and K+ increased laccase activity, whereas 5 mM Fe2+ and Al3+ inhibited laccase activity. The laccase activity was inhibited by the addition of low concentrations of sodium azide and L-cysteine. The optimal pH for the 2,2'-Azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) diammonium salt was 4.4. Guaiacylglycerol-β-guaiacyl ether, a lignin model compound, was polymerized by the HeLac4c enzyme. These results indicated that HeLac4c is a novel oxidase biocatalyst for the bioconversion of lignin into value-added products for environmental biotechnological applications.
Keywords: Recombinant protein, secretion, laccase, Hericium erinaceus, Saccharomyces cerevisiae
Introduction
Plant biomass, a pivotal renewable resource for energy and biochemistry, plays a critical role in achieving carbon neutrality [1]. The conversion of plant biomass into platform molecules, facilitated by depolymerization and fermentation, is essential to make this process cost-effective, compensating for fossil fuel production and reducing greenhouse gas emissions [2]. Biorefining, a transformative process, converts plant biomass—primarily composed of cellulose, hemicellulose, and lignin-into a spectrum of marketable products and energy. While cellulose and hemicellulose are relatively easy to decompose, the robust depolymerization of lignin, owing to its rigidity and recalcitrance, necessitates advanced methods such as pyrolysis, chemical catalysis, and the involvement of natural lignin-degrading microorganisms and enzymes [3, 4].
Natural lignin-degrading microorganisms, such as fungi and bacteria, or enzymes, such as laccase (EC 1.10.3.2), lignin peroxidase (EC 1.11.1.14), manganese peroxidase (EC 1.11.1.13), and versatile peroxidase (EC 1.11.1.16), are also used to degrade lignin under mild reaction conditions [5]. Among the various lignin-degrading enzymes, laccases stand out as multicopper oxidases with the ability to oxidize a diverse range of phenolic and non-phenolic compounds [6]. Laccase is widely distributed in plants, insects, and bacteria and is involved in lignin biosynthesis by cleaving the C-C and C-O bonds of lignin. In fungi, including mushrooms, laccases play a role in sporulation, fruiting body formation, melanin synthesis, plant pathogenicity, and in vivo degradation [7]. Many fungal laccase genes have been discovered, heterologously expressed, and characterized. However, more effective enzymes must be identified and produced.
While previous efforts have explored strategies like exploring new fungal strains and optimizing growth conditions for laccase production, our research centers on a novel laccase from
In this study, novel laccases were identified in
Materials and Methods
Strains, Media, and Chemicals
Laccase Activity Assay
The laccase activity assay was performed as previously described with slight modifications [8]. Laccase activity was determined by oxidation of ABTS at 30°C as monitored through an absorbance increment at 420 nm in phosphate buffer. To analyze the oxidative activity of the secreted laccase, 50 μl of culture supernatant was added to 950 μl of 0.2 mM citrate phosphate buffer containing 2.0 mM ABTS.
Purification of Laccase Enzyme from Mushroom and N-Terminus Sequence Analysis
After harvesting the fruiting body of
Secretion of H. erinaceus Laccase in S. cerevisiae
To produce recombinant laccase proteins, yeast codon-optimized laccase genes were synthesized by Bioneer (Republic of Korea). DNA fragments were amplified via PCR using the synthesized DNA as a template and an appropriate primer set (Table 1). Each amplicon was amplified again using homologous flank forward and reverse (HF and HR) primers and then cloned into YGa-TFPn shuttle vector using in vivo recombination [19]. Transformants were selected on SD-Ura plates at 30°C and cultured in test tubes containing 3 ml of YPD broth at 30°C, 200 rpm for 48 h. Then, 1 ml culture supernatant was concentrated via acetone precipitation, mixed with sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) sample buffer (Bio-Rad, USA), analyzed on 12% Tris-glycine gels under denaturing conditions, and stained with Coomassie Brilliant Blue R-250 solution.
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Table 1 . Primers used in this study to construct HeLac4 tag vectors..
Amplicon Primer Sequence (5’ to 3’) HeLac4 oF1 GAATTTTTGAAAATTCAAGAATTCATGCGTCCCTCGTGCTTGG HeLac4 F1 CTCGCCTTAGATAAAAGAGCGATTGGCCCGGTCGGCG HeLac4a Ra1 GTGATGGTGATGGTGATGCATCAGCGCGCGCGCACACC HeLac4b Rb1 GTGATGGTGATGGTGATGTCTCCAAAACGATACAGAACG HeLac4c Rc1 GTGATGGTGATGGTGATGCTGCCCTTGCGTCTCGTTCTTG HeLac4d Rd1 GTGATGGTGATGGTGATGAACCACAAGAAAGGTCACGTACG HeLac4 HF GGCCGCCTCGGCCTCTGCTGGCCTCGCCTTAGATAAAAGA HeLac4 HR GTCATTATTAAATATATATATATATATATTGTCACTCCGTTCAAGTCGAC HeLac4His HHR GTCATTATTAAATATATATATATATATATTGTCACTCCGTTCAAGTCGACTTAG TGATGGTGATGGTGATG
Purification of Recombinant Laccase
Fed-batch fermentation was performed to produce recombinant laccase, as described previously [19]. A seed culture for fermentation was prepared in a 250 ml flask containing 50 ml of SD-Ura broth at 30°C. After 24 h of growth, the seed culture was transferred to 200 ml of YPD broth to prepare the preculture. In total, 250 ml of cultured seeds were inoculated into a 5 L jar fermenter (Kobiotech, Republic of Korea) with 1.75 L of the main medium (comprising 3% yeast extract, 1.5% peptone, and 2% glucose). During fermentation, the feeding medium (comprising 5% yeast extract and 30% glucose) was added manually to maintain the glucose concentration at approximately 1%, and the pH was adjusted to 5.5 using NH4OH. After fermentation, the culture supernatant was harvested using centrifugation at 10,000 ×
Enzyme Characterization
The effects of various inhibitors and organic solvents on laccase activity were determined by adding the compounds at the indicated concentrations to the assay mixture and measuring the residual activity under standard assay conditions. The effects of pH and temperature on the enzyme activity and stability were measured using 2 mM ABTS as the substrate. The optimum pH was calculated by measuring the activity at 40°C after incubation for 10 min over the pH range 2.0–9.0 using as buffers 0.1 M phosphate (pH 2.0), 0.1 M citrate-phosphate (pH 3.0–5.0), 0.1 M phosphate (pH 6.0–7.0), and 0.1 M Tris-HCl (pH 7.0–9.0). The thermostability of the laccase was estimated after 2 h incubation of the purified enzymes at temperatures ranging from 30–70°C and pH 7.0, and the residual activity under standard assay conditions was analyzed. The effects of metal ions and inhibitors on laccase activity were determined using 2 mM ABTS as the substrate in 50 mM sodium acetate buffer (pH 5.0) in the presence of metal ions or inhibitors at appropriate concentrations. All assays were performed in triplicate.
Depolymerization of Guaiacylglycerol-β-guaiacyl ether or Kraft lignin with HeLac4c
Guaiacylglycerol-β-guaiacyl ether (GGE), its degradation product vanillin, and kraft lignin were analyzed using high-performance liquid chromatography (HPLC, Agilent 1200 HPLC system, USA). The HPLC procedure was performed by injecting fractions using a reverse-phase Eclipse XDB-C18 column (4.6 × 150 mm, 5 μm, Agilent). Gradient separation was performed from distilled water (solvent A) to methanol (solvent B) using the following conditions: flow rate 1.0 ml/min, column temperature 25°C, time 0 min-5% B, 5 min-25% B, 10 min-40% B, 30 min-50% B, time 35 min-100% B. Using a UV detector at 280 nm, authentic GGE, and vanillin were detected at 13.522 and 10.497 min, respectively. Kraft lignin was detected as multiple peaks.
Results
Partial Purification of the Extracellular Laccase Proteins
Mushroom
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Figure 1. Phylogenetic analysis (A) and sequence alignment (B) of
Hericium erinaceus laccases HeLac4a, b, c, and d with other known laccases. The conserved sequences are marked with black or gray boxes.
Identification and Expression of Iso-Type Laccases
Based on the N-terminal amino acid sequence, the laccase-coding cDNAs identified in our previous RNA-seq mapping as four isotranscripts for HeLac4a, b, c, and d, among the putative laccase-coding genes in the mushroom genome were 1464, 1305, 1569, and 1470 bp in length, encoding 487, 434, 522, and 489 amino acid residues, respectively. To identify the optimal secretion fusion partner, codon-optimized laccase genes for HeLac4a, b, c, and d were combined with a previously developed translational fusion partners (TFP) library (Table 2) and secreted by
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Table 2 . List of 20 TFPs..
TFP Number Gene Name Lengtha Signal peptide Lengtha Characteristicsb 1 MFα 93 19 Pre-pro SS 2 YAR066 118 23 Pre-SS, N-gly, Ser, Ala-rich, GPI 3 YFR026c 130 18 Pre-SS, N-gly, TMD 4 CIS3 117 21 Pre-pro-SS, O-gly, PIR 5 SRL1 66 20 Pre-SS, N-gly, O-gly, Ser, Thr-rich 6 SIM1-1 97 19 Pre-SS, N-gly, O-gly, Ser, Ala-rich, SUN family 7 OST3 199 22 Pre-SS, O-gly 8 Yml190w 77 20 Pre-SS, N-gly, internal repeats, CWP 9 EMP24 94 19 Pre-SS, TMD 10 HSP150 174 18 Pre-pro-SS 11 ECM33 68 19 Pre-SS, GPI 12 ATG27 157 19 Pre-SS, TMD 13 UTH1 98 17 Pre-SS, SUN family, Ser-rich 14 BGL2 91 23 Pre-SS 15 SCW4 124 19 Pre-SS, CWP 16 CCW12 138 18 Pre-SS, CWP 17 FIT3 176 18 Pre-SS, GPI 18 YGP1 138 19 Pre-SS, N-gly, CWP 19 CCW14 115 22 Pre-SS, CWP 20 SED1 170 18 Pre-SS, GPI anumber of amino acids.
bPre-SS, pre-secretion signal; Pre-pro-SS, pre-pro secretion signal; N-gly, N-glycosylation site; O-gly, o-glycosylation site; GPI, glycosyl phosphatidylinositol anchor protein; PIR, protein internal repeats; CWP, cell wall protein; TMD, transmembrane domain..
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Figure 2. Translational fusion partner plasmid construction diagram for identification of optimum secretion fusion partner (A) and analysis of secretion of HeLac4c by translational fusion partners (TFPs) through SDS-PAGE (upper image) and western blot analysis (lower image) detected with anti-His antibody (B).
Characterization of HeLac4c Secreted from S. cerevisiae
According to the primary amino acid sequence, eight potential N-glycosylation sites (Asn-X-Ser/Thr, where X is any amino acid except proline) were identified with NetNGlyc (https://services.healthtech.dtu.dk/services/NetNGlyc-1.0/) [28] within the catalytic domain (Fig. 3A) and seven potential O-glycosylation sites were predicted with NetOGlyc. The protein secreted by T18 was purified and resolved using SDS-PAGE. In the absence of Endo H, heavily smeared bands were observed. However, upon treatment with Endo H, a clear band at approximately 70 kDa and a smeared band at approximately 55 kDa were identified (Fig. 3B). The glycoprotein nature of HeLac4c, which affects its molecular mass, was further emphasized through ABTS analysis, which showed a 25% loss of activity after removing glycosylation with Endo H, indicating that N-glycosylation of laccase could affect its binding affinity to substrates and the catalytic rate of laccase [29]. The optimum pH for ABTS oxidation was pH 4.4 (Fig. 3C), and that for syringaldazine was pH 5.0. Similar optimum pH values for ABTS and syringaldazine have been reported for other white laccases [7]. The enzyme stability after 2 h exposure at various temperatures revealed 75% retained activity until 40°C and rapid loss of activity after 50°C (Fig. 3D).
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Figure 3. Characterization of the secreted recombinant HeLac4c enzyme.
Identification of protein N-glycosylation sites and copper binding sites of laccases expressed in
S. cerevisiae (A). SDS-PAGE stained with Coomassie Brilliant Blue R-250 of HeLac4c with and without Endo H treatment for the removal of N-glycosylation (B). Effect of pH on oxidation activities of recombinant laccase (C) and stability of HeLac4c after pretreatment for 2 h at 10−80°C (D) Activity assays of recombinant HeLac4c enzyme were performed by oxidation of ABTS in 100 mM citrate-phosphate buffer at pH 4.0.
The enzyme activity of HeLac4c was measured using ABTS as the substrate at different concentrations of metal salt (0–10 mM) at pH 4.0 and 25°C (Table 3). In general, enzyme activity increased in the presence of metal salts. When 5 or 10 mM Cu2+ ions were added to the buffer, the ABTS oxidative activity increased by 50% compared with that in the absence of Cu2+. The addition of 10 mM metal ions such as Na+, K+, Mg2+, or Zn2+ increased the activity from 5 to 65%. In particular, when Na+ was added, the activity increased by up to 65%. For Zn2+ and Cr3+, the activity was higher when 5 mM were added than when 10 mM were added. However, metal ions such as Fe2+ and Al+ significantly inhibited HeLac4c activity. The enhancement of activity by the addition of metal ions suggests their potential use in industrial processes where metal ion exposure is expected, despite the potential limitations posed by specific metal ions such as Fe2+ and Al+.
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Table 3 . Effects of metal ions on the ABTS oxidation activities of HeLac4c..
Metal salt Concentration (mM) Relative activity (%) None – 100 Na2SO4 5 125 10 165 K2SO4 5 120 10 125 MgSO4 5 115 10 120 FeSO4 5 5 10 −1 ZnSO4 5 110 10 105 AlK(SO4)2 5 60 10 60 CrK(SO4)2 5 145 10 100 CuSO4 5 150 10 150
We studied the effects of four known laccase inhibitors on HeLac4 activity (Table 4). The enzyme was incubated with different compounds prior to activity measurements. Almost complete inhibition of HeLac4c activity was observed in 1 mM sodium azide (NaN3), a metalloenzyme inhibitor. L-cysteine at 10 mM, which affects disulfide bond cleavage, inhibited more than 90% of the activity. Ethylenediaminetetraacetic acid (EDTA), a well-known heavy metal ion-chelating agent, inhibited the activity of HeLac4c at a concentration of 25 mM. Hydrogen peroxide (H2O2) showed the least inhibitory effect, as the enzyme retained over 50% of its original activity even at 50 mM H2O2. This high resistance to hydrogen peroxide may be attributed to structural adaptations of laccase, enabling its function as an oxidative catalyst. H2O2 is a potent oxidizing agent in the presence of Cu [30].
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Table 4 . Effects of inhibitors on the oxidation activities of HeLac4c..
Inhibitor Concentration (mM) Relative activity (%) None – 100 Dithiothreitol 1 96.0 5 92.5 10 75.9 EDTA 1 100 5 79.9 10 52.3 L-Cysteine 1 100 5 26.6 10 6.0 NaN3 0.01 100 0.1 26.6 1 7.0
Biodegradation of GGE with HeLac4c
Guaiacylglycerol-β-guaiacyl ether (GGE), a lignin model compound, was subjected to laccase oxidation by purified HeLac4c. Two mM GGE was treated with no enzyme (blue line in Fig. 4A), HeLac4c (red), or commercial TvLac (green) to test the biodegradation of laccase at pH 4 and analyzed using HPLC. No significant changes were observed when ABTS was not used. However, with ABTS, GGE (retention time of 18 min) was converted to GGE polymers (peaks with a retention time of ≥20 min), as previously reported [8, 31]. Trace amounts of GGE fragments (peaks with retention times between 10 and 15 min) were produced after the complete conversion of GGE to GGE polymers. Some GGE polymers formed from oxidation by HeLac4c were detected using HPLC; however, owing to the hydrophobicity of the polymers, they precipitated from the reaction solution (Fig. 4B). In addition, although HeLac4c was also incubated with Kraft lignin, no depolymerization peak was detected in HPLC analysis.
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Figure 4. 2 mM guaiacylglycerol-β-guaiacyl ether (GGE) was treated with no enzyme (blue), HeLac4c (red), and commercial TvLac (green) for testing biodegradation of laccase in pH 4 and analyzed with highperformance liquid chromatography (HPLC) without (A) and with addition of 1mM ABTS (B).
GGE retention time was approximately 18 minutes, and GGE polymers at 31 and 33 minutes were observed with the addition of 1 mM ABTS. GGE depolymerized unidentified fragmented GGE monomers at 11–14 min.
Discussion
Four isotypes of HeLac4 were isolated from the
Recently, the secretion of lignin depolymerization peroxidases from
The significance of our study lies in the discovery of a novel lignolytic enzyme and the adept ability to selectively secrete the enzyme within a model organism such as
In summary, the translational fusion partner system facilitated the successful expression of novel
Author Contributions
Jin Kang: Data curation, Methodology, Writing—review, and editing. Thuat Van La: Methodology, Validation, Formal analysis. Mi-Jin Kim: Methodology, Validation, Formal analysis. Jung-Hoon Bae: Supervision. Bong Hyun Sung: Supervision, Writing—review, and editing, and funding acquisition. Seonghoon Kim: Supervision, Writing—review and editing. Jung-Hoon Sohn: Conceptualization, Supervision, Funding acquisition.
Acknowledgments
This work was supported by the National Research Foundation of Korea (NRF) grants (NRF-2022M3J5A1056169, 2021M3A9I5023254, 2019R1A2C1090726, and 2018M3A9H3024746), a National Research Council of Science & Technology grant (No. CAP20024-200) of the Korean government (MSIT) and the Research Initiative Program of KRIBB.
Conflict of Interest
The authors have no financial conflicts of interest to declare.
Fig 1.
Fig 2.
Fig 3.
Fig 4.
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Table 1 . Primers used in this study to construct HeLac4 tag vectors..
Amplicon Primer Sequence (5’ to 3’) HeLac4 oF1 GAATTTTTGAAAATTCAAGAATTCATGCGTCCCTCGTGCTTGG HeLac4 F1 CTCGCCTTAGATAAAAGAGCGATTGGCCCGGTCGGCG HeLac4a Ra1 GTGATGGTGATGGTGATGCATCAGCGCGCGCGCACACC HeLac4b Rb1 GTGATGGTGATGGTGATGTCTCCAAAACGATACAGAACG HeLac4c Rc1 GTGATGGTGATGGTGATGCTGCCCTTGCGTCTCGTTCTTG HeLac4d Rd1 GTGATGGTGATGGTGATGAACCACAAGAAAGGTCACGTACG HeLac4 HF GGCCGCCTCGGCCTCTGCTGGCCTCGCCTTAGATAAAAGA HeLac4 HR GTCATTATTAAATATATATATATATATATTGTCACTCCGTTCAAGTCGAC HeLac4His HHR GTCATTATTAAATATATATATATATATATTGTCACTCCGTTCAAGTCGACTTAG TGATGGTGATGGTGATG
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Table 2 . List of 20 TFPs..
TFP Number Gene Name Lengtha Signal peptide Lengtha Characteristicsb 1 MFα 93 19 Pre-pro SS 2 YAR066 118 23 Pre-SS, N-gly, Ser, Ala-rich, GPI 3 YFR026c 130 18 Pre-SS, N-gly, TMD 4 CIS3 117 21 Pre-pro-SS, O-gly, PIR 5 SRL1 66 20 Pre-SS, N-gly, O-gly, Ser, Thr-rich 6 SIM1-1 97 19 Pre-SS, N-gly, O-gly, Ser, Ala-rich, SUN family 7 OST3 199 22 Pre-SS, O-gly 8 Yml190w 77 20 Pre-SS, N-gly, internal repeats, CWP 9 EMP24 94 19 Pre-SS, TMD 10 HSP150 174 18 Pre-pro-SS 11 ECM33 68 19 Pre-SS, GPI 12 ATG27 157 19 Pre-SS, TMD 13 UTH1 98 17 Pre-SS, SUN family, Ser-rich 14 BGL2 91 23 Pre-SS 15 SCW4 124 19 Pre-SS, CWP 16 CCW12 138 18 Pre-SS, CWP 17 FIT3 176 18 Pre-SS, GPI 18 YGP1 138 19 Pre-SS, N-gly, CWP 19 CCW14 115 22 Pre-SS, CWP 20 SED1 170 18 Pre-SS, GPI anumber of amino acids.
bPre-SS, pre-secretion signal; Pre-pro-SS, pre-pro secretion signal; N-gly, N-glycosylation site; O-gly, o-glycosylation site; GPI, glycosyl phosphatidylinositol anchor protein; PIR, protein internal repeats; CWP, cell wall protein; TMD, transmembrane domain..
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Table 3 . Effects of metal ions on the ABTS oxidation activities of HeLac4c..
Metal salt Concentration (mM) Relative activity (%) None – 100 Na2SO4 5 125 10 165 K2SO4 5 120 10 125 MgSO4 5 115 10 120 FeSO4 5 5 10 −1 ZnSO4 5 110 10 105 AlK(SO4)2 5 60 10 60 CrK(SO4)2 5 145 10 100 CuSO4 5 150 10 150
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Table 4 . Effects of inhibitors on the oxidation activities of HeLac4c..
Inhibitor Concentration (mM) Relative activity (%) None – 100 Dithiothreitol 1 96.0 5 92.5 10 75.9 EDTA 1 100 5 79.9 10 52.3 L-Cysteine 1 100 5 26.6 10 6.0 NaN3 0.01 100 0.1 26.6 1 7.0
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