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Advances in the Structures, Pharmacological Activities, and Biosynthesis of Plant Diterpenoids
1School of Chinese Materia Medica, Tianjin University of Traditional Chinese Medicine, Tianjin 301617, P.R. China
2State Key Laboratory of Component-based Chinese Medicine, Tianjin University of Traditional Chinese Medicine, Tianjin 301617, P.R. China
J. Microbiol. Biotechnol. 2024; 34(8): 1563-1579
Published August 28, 2024 https://doi.org/10.4014/jmb.2402.02014
Copyright © The Korean Society for Microbiology and Biotechnology.
Abstract
Keywords
Graphical Abstract
Introduction
Diterpenes are widely distributed in plants, fungi, and marine organisms. The backbones of diterpenes are composed of four isoprene units that join head-to-tail. The complexity and diversity of diterpenoids make them rich in biological activities. Several plant diterpenes have been developed into clinical drugs to treat various diseases. For example, paclitaxel from
Currently, various diterpenoids have been discovered in plants, showcasing higher diversity and content compared to animals and microorganisms. It seems that plant-derived diterpenes have higher purity and biological activity [6-8]. Therefore, the primary sources of diterpenoids rely on plant extraction. However, the low content of diterpenoids in plants, the long growth cycle of plants, and the complicated extraction and purification processes for diterpenes do not satisfy the requirements for green and sustainable diterpenoid production. In recent years, the chemical synthesis of many diterpenoids has been accomplished. However, due to the diverse structure of diterpenoids, the yield of total synthesis is often low and is not practical for industrial production. Therefore, exploring the biosynthetic pathways for plant diterpenoids and using the synthetic biology strategy to design and engineer microbial strains to yield plant diterpenoids has been recognized as a promising method to produce these crucial compounds (Fig. 1).
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Fig. 1. Comprehensive research strategies for plant diterpene resources, including their structures, biosynthetic pathway, heterologous production and biological activity (Adapted from [96, 126-130]).
With the explosion of genome sequencing data and the increasing characterization of biosynthetic enzymes, the biosynthetic pathways of many diterpenoids have been elucidated, which lays the foundation for the heterologous production of diterpenoid products. Through metabolic engineering, synthetic biology, and fermentation engineering, researchers have developed environmentally friendly biosynthetic strategies and designed efficient cell factories to produce high-value diterpenoids (Fig. 1). Various microorganisms, including
This review first describes the chemical structures and pharmacological activities of plant diterpenoids. Then we summarize the research progress of the biosynthetic pathways of a few diterpenes and the heterologous production of plant diterpenoids in microbial cell factories. We predict the prospects and development trends of synthetic biology in producing plant diterpenoids, aiming to provide more insights for future research and application of diterpenoids.
Classification of Plant Diterpenoids
According to the number of skeleton rings, plant diterpenoids can be divided into acyclic, monocyclic, dicyclic, tricyclic, tetracyclic, and macrocyclic subfamilies. Besides sesquiterpenoids, diterpenoids have the most abundant structure types in terpenoids, which can be generated through the fracture, carbon bond shift, and skeleton rearrangement (Fig. 2). In this paper, we classify diterpenoids in plants based on the skeleton ring system.
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Fig. 2. The different skeleton types of plant diterpenoids and the corresponding compounds.
Acyclic and monocyclic diterpenoids (cyan), bicyclic diterpenoids (blue), tricyclic diterpenoids (yellow), tetracyclic diterpenoids (pink), and macrocyclic diterpenoids(green).
Acyclic and Monocyclic Diterpenoids
Acyclic and monocyclic diterpenoids are relatively rare in plants. Still, they have essential biological functions. Phytol is an acyclic diterpene commonly found in the leaves of green plants [12]. It acts as a side chain and binds to magnesium-containing porphyrins to form chlorophyll. At the same time, phytol is used as a precursor for the biosynthesis of vitamins E and K1 [13]. Recently, three new acyclic diterpenoids with strong anti-inflammatory activity, aphanamoxenes A, B, and C, were isolated from the seed of
Bicyclic Diterpenoids
Bicyclic diterpenoids are mainly divided into the labdane and clerodane families. In addition, bicyclic diterpenoids can combine with other structure types to form new compounds, such as ginkgolides composed of sesquiterpene and diterpene structures [16].
Labdanes. Labdanes have naphthane as the parent nucleus and possess various structures formed by rearranging and C–C bond cleavage of the parent nucleus. They are divided into the labdane (
Clerodanes. Clerodanes have attracted attention because of their insect antifeedant activity. Most of them were found in Angiosperm. The clerodanes can be divided into two classes, clerodane and
Others. Ginkgolides were isolated from
Tricyclic Diterpenoids
Tricyclic diterpenoids are abundant in nature and rich in biological activities, such as anti-tumor, anti-inflammatory, and antibacterial. Tricyclic diterpenoids mainly include abietane, pimarane, rosane, cassane, totarane, and spongian. They can be divided into two types: aromatic and non-aromatic, according to the structural characteristics of their C-ring skeleton.
Abietanes. In the 19th century, people found the first abietane diterpene from colophony, abietic acid. It has antitumor, antioxidant, and other activities [24]. Studies have shown that methyl abietate, abietinol, and abietinal can be obtained by modifying the carboxyl at the C-18 position through esterification, reduction, and oxidation. Through assessing their cytotoxicity, found that among them, methyl abietate showed the highest cytotoxicity, and abietinol presented weaker cytotoxicity [25]. Carnosic acid is also one of the representative tricyclic diterpenes, which was isolated from
Pimaranes. Like abietanes, pimaranes were also originally isolated from colophony. They can be divided into four types, namely, pimarane, isopimarane,
Others. In addition to the two tricyclic diterpenes described above, there are several other types, such as rosane, cassane, totarane, and spongian. Totarol is a representative totarane diterpene isolated from the duramen of
Tetracyclic Diterpenoids
Tetracyclic diterpenoids can be classified into two types. The tetracyclic diterpenes with a C-8 bridging ring include kaurane,
Kauranes. Kaurene diterpenoids were initially discovered from the essential oil of the leaves of
Gibberellins. Gibberellins (GAs) are a family of important hormones that control plant growth and development. GAs share the gibberellane backbone and differ by changing the number and position of double bonds and hydroxyl groups. GAs were initially isolated from
Atisanes. Atisane diterpenoids mainly exist in nature as
Others. Phyllocladanes are rare in nature, and their structures are similar to kauranes. Calliterpenone and its analogs isolated from
Macrocyclic Diterpenoids
Taxanes. At present, more than 500 taxanes have been found. They can be divided into four subfamilies,
Due to the side effects and poor water solubility of paclitaxel, plenty of research has been focused on its structure modification in recent years. Bouchet
Others. Macrocyclic diterpenes are a class of compounds whose molecular skeleton consists of four isoprene units and has a ring structure of more than six members. Their structures are complex, and generally have variety of functional groups, with unique biological activities and pharmacological effects, such as cytotoxicity, anti-tumor, antiviral and anti-inflammatory activities. These compounds are mainly found in plants of Euphorbiaceae and Thymelaeceae [7]. Such as cembranes, tigliane, casbanes, and jatrophanes, which have become the research hotspot due to their different skeletal structures and extensive biological activities (Fig. 2). For example, the ingenol extracted from
Cembranes can be divided into isopropyl, five-, six-, seven-, and eight-membered lactone rings, ring-opening, reduced-carbon type, etc. A new cembrane diterpene, named (-)-(1S)-15-hydroxy-18-carboxycembrene, was isolated from the roots of
Pharmacological Activities of Plant Diterpenoids
Diterpenoids have a wide range of biological activities due to their complex and diverse structure. They are commonly used to treat cardiovascular diseases, hypertension[56], and diabetes [57, 58]. These compounds also have antineoplastic, anti-inflammatory, antibacterial, antiviral [59], antioxidative [60], and antimalarial activities [61]. Herein, our paper systematically summarizes the pharmacological studies on diterpenoids.
Antineoplastic Activity
The antitumor effect is one of the most interesting pharmacological activities of diterpenes. Paclitaxel, triptolide, and
It is well known that non-small cell lung cancer (NSCLC) is one of the most severe diseases, it is characterized by a high incidence of metastasis and poor survival, and epithelial-to-mesenchymal transition (EMT) is a major factor inducing tumor metastasis. Deng
In recent years,
Anti-Inflammatory Activity
The pathogenesis of numerous diseases is closely linked to inflammation. Diterpenes exhibit significant anti-inflammatory properties, suggesting their potential therapeutic efficacy in a range of conditions including neuroinflammatory diseases, atherosclerosis, liver damage, and colitis. The inflammatory response induced by cytokines and chemokines can cause various inflammatory diseases, and anti-inflammatory drugs are an important therapeutic strategy. Tanshinone IIA and cryptotanshinone have significant anti-inflammation activities. The research showed that tanshinone IIA plays an anti-inflammatory role by inhibiting the expression of inflammatory cytokines and TLR2, NF-kappa B, and ICAM-1 [67].
(1
Wang
Antibacterial Activity
Some diterpenoids have a broad antimicrobial spectrum, low toxicity, and high antibacterial activity. For instance,
Siddique
Others
In addition to the above common activities, diterpenoids have numerous other biological activities. Such as andrographolide, 14-dehydroxyandrographolide-12-sulfonic acid sodium salt, and 14-
Due to its high sweetness and low calorie, rubusoside is used as a sweetener. It also can combine with resveratrol, curcumin, and other anticancer drugs to increase solubility, such as by 33-fold of resveratrol and 60-fold of curcumin [74, 75].
GAs is a large group of endogenous hormones that can regulate plant vegetative and reproductive growth. They play important roles in promoting seed germination, root growth, stem and leaf growth, flowering, and fruit ripening [76]. Many diterpenoids showed noteworthy neuroprotective effects in cell injury models induced by H2O2 and MPP+ [77], they can activate the autophagia and trigger the parkin/IKK/p65 pathway to increase the OPA1. They can also show a neuroprotective effect by inhibiting the COX-2 pathway and MAPK pathway [78].
Studies on the Biosynthesis of Plant Diterpenoids
In plants, all terpenoids are formed by the condensation of five-carbon unit isopentenyl pyrophosphate (IPP) and dimethylallyl pyrophosphate (DMAPP) to form the precursor geranyl diphosphate (GPP), farnesyl diphosphate (FPP), and (
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Fig. 3. (A) Biosynthesis of the IPP and DMAPP via the MVA pathway (purple) and MEP pathway (green).
Enzyme abbreviations are as follows; AACT, acetoactl-CoA thiolase. HMGS, hydroxymethylglutaryl-CoA synthase. HMGR, hydroxymethylglutaryl-CoA reductase. MVK, mevalonate kinase. PMK, phosphmevalonate kinase. MVD, mevalonate 5- phosphate decarboxylase. IDI, isopentenyl diphosphate isomerase. DXS, 1-deoxy-D-xylulose 5-phosphate synthase. DXR, 1- deoxy-D-xylulose 5-phosphate reductoisomerase. MCT, 2C-methyl-D-erythritol 4-phosphate cytidyltransferase. CMK, 4- (cytidine 5’-diphospho)-2C-methyl-D-erythritol kinase. MDS, 2C-methyl-D-erythritol-2,4’-cyclodiphosphate synthase. HDS, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase. HDR, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase. For intermediates, GAP, D-glyceralfehyde-3-phosphate. DXP, 1-deoxy-D-xylulose 5-phosphate. MEP, 2C-methyl-D-erythritol 4- phosphate. CDP-cytidyl diphosphate. MEcDP, 2C-methyl D-erythritol-2,4-cyclodiphosphate. HMBDP-1-hydroxy-2-methyl- 2-(E)-butenyl-4-diphosphate. OP and OPP signify mono- and diphosphate moieties, respectively. Pi represents inorganic phosphate (B) Biosynthetic pathway of forskolin.
After synthesizing IPP and DMAPP, geranylgeranyl pyrophosphate synthase (GGPPS) catalyzes the synthesis of GGPP, a precursor common to all diterpenoids, by three molecules of IPP and one molecule of DMAPP. GGPP could form the skeletons of various diterpenes under the action of different diterpene synthases. Then these skeletons are converted into different compounds through a series of enzymatic reactions, such as hydroxylation, peroxidation, methylation, glycosylation, and cleavage rearrangement. According to the functional domains of diterpene synthases, they can be divided into Class I, Class II, and Class I/ Class II diterpene synthases, Class I and Class II diterpene synthases contain DDXXD and DXDD domains, respectively. Class I/ Class II diterpene synthases contain both types of characteristic domains, having the characteristic of catalyzing two reactions at the same time. For example, abietadiene synthase isolated from
Biosynthesis of Forskolin
Forskolin is a diterpenoid belonging to the labdane. It is produced uniquely to the root species of
In plants, GGPP is synthesized through the MEP pathway. The diterpene synthases are used to subsequently generate the basic diterpene skeleton, and finally, forskolin is obtained under a series of oxidases and acetyltransferases (Fig. 3B). Zerbe
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Fig. 4. Biosynthetic pathway of tanshinones.
Dash arrowhead indicates that the enzymes have not been identified.
Biosynthesis of Tanshinones
Tanshinones are a class of lipid-soluble abietane found in
In
There are many unknowns in the biosynthetic pathways of tanshinones and their intermediates. In recent years, many reports have paid more attention to the regulatory factors in the biosynthetic pathway. For example, Deng
Biosynthesis of Steviol Glycosides
STE-G are high-sweetness and zero-calorie sweeteners isolated from
KA is converted to steviol by adding a hydroxyl at the C13 under the action of ent‐kaurenoic acid 13‐hydroxylase (KA13H). Steviol is the common precursor of all STE-G. Under the catalysis of glycosyltransferase
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Fig. 5. Biosynthetic pathway of steviol glycosides.
The most widely used STE-G on the market is Reb A, which has high sweetness and safety and has passed the safety certification of the United States Food and Drug Administration. However, Reb A has a bitter aftertaste. Compared to Reb A, Reb D and Reb M have one or two more glucose molecules attaching to the C-19 glycosyl, so the bitterness is significantly reduced. Wang
Biosynthesis of Paclitaxel
Paclitaxel is mainly isolated from the bark of
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Fig. 6. Biosynthetic pathway of paclitaxel.
Blue font indicates that the enzymes have not been identified.
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Table 1 . Overview of production of plant diterpenoids in different hosts.
Host Diterpene Metabolic engineering strategies Titer (mg/l) Reference E. coli ent -kaurane◆ Screening of optimal GGPPS and E. coli host
◆ Overexpression of three key enzymes in MEP pathway
◆ Culturing strain in a bioreactor578 [114] E. coli Steviol ◆ Optimization of the upstream pathway
◆ Screening of properE. coli host and kaurene oxidase
◆ Truncating the N terminus-modified mutants of kaurene oxidase and attachment of soluble tags
◆ Codon optimization and increasing the copy number ofCPR
◆ Introduction of cytochrome b5 (CYB5)
◆ Site-directed mutation ofAt CYP714A21073.8 [115] E. coli Taxadiene ◆ Modularization of the taxadiene metabolic pathway
◆ Using systematic multivariate analysis to achieve a balance of the two modules1020 [9] S. cerevisiae Miltiradiene ◆ Overexpression of the pathway genes
◆ Downregulation ofErg9
◆ Knocked out transcriptional regulators
◆ Optimization of the medium
◆ Fusion ofCf TPS1 andSm KSL1
◆ Protein modification ofSm KSL13500 [117] S. cerevisiae Forskolin ◆ Fusion of BTS1 andERG20 F96C
◆ Overexpression ofHMG1
◆ Truncating the N terminus ofCf CPR
◆ Fusion ofCf CYP76AHs and tR~tB
◆ Regulation of copy numbers of the target genes, amplification of the endoplasmic reticulum (ER) area and cofactor metabolism enhancement
◆ Fed-batch fermentation21.47 [119] S. cerevisiae Carnosic acid ◆ Overexpression of BTS1 -GGGS-ERG20 F96Cp
◆ Codon-optimization, N-terminus truncation, and fusion oftSm CPS andtSm KSL
◆ UsedSm CPR fromS. miltiorrhiza
◆ Co-expression ofSm CPR~t28Sp Cytb5 fusion protein and CYP76AH1
◆ Overexpression ofSc CTA1 andSc CTT1
◆ Overexpression ofINO2 , theHEM3 (heme synthase) gene, and the NADH kinase gene (POS5 )
◆ Batch and fed-batch fermentation24.65 [120] S. cerevisiae Rubusoside ◆ KS from G. fujikuroi , KO, CPR1, UGT74G1, and UGT85C2 fromS. rebaudiana , KAH fromArabidopsis thaliana
◆ Overexpression oftHMG1 andIDI1
◆ Site-directed mutation ofFPS F112A
◆ Replacing promoter ofINO2 with a stronger one
◆ Overexpression of the efflux-pumpPDR11 and the stress-response factorMSN4
◆ Knocking outGAL7 and overexpression ofPGM2 1368.6 [94] Y. lipolytica Gibberellin ◆ Downregulating the endogenous squalene synthase gene
◆ ChoosingAt CPS,At KS,At KO,At ATR2 angYl Cyb5 to producingent -KA
◆ Codon-optimization of all genes
◆ GeneAt C20ox andAt C3ox were expressed under the control of the strong promotorsPr Exp andPr Tefintron, respectively
◆ N-terminus truncation ofAt CPS,At KS, andAt KO and fusion of CPS and KSGA4 17.29
GA3 2.93[38] C. reinhardtii Sclareol ◆ Codon optimization of terpene synthase
◆ All transgenes were driven by the PSAD promoter and FDX1 terminator
◆ Using GGPPS fromC. reinhardtii and sclareol synthase fromS. sclarea 656 [121]
GGPP is first cyclized to taxadiene by the taxadiene synthase (TASY), a Class I diterpene synthase. Then taxadiene undergoes a series of hydroxylation at the C-1, C-2, C-4, C-5, C-7, C-9, C-10, and C-13 positions. The enzymes catalyzing hydroxylation at five positions of taxadiene have been successfully identified [98-100]. Stefan
Formation of the side chain of paclitaxel is the rate-limiting step in paclitaxel biosynthesis. With L-
By analyzing the functions of the enzymes identified so far, we can see that the hydroxylation and acylation on the parent nucleus are alternate, and the order of most reactions still needs to be determined. There are about eight CYP450 enzymes involved in paclitaxel biosynthesis, but only five have been identified. The corresponding CYP450 hydroxylases catalyzing reactions at the C-1, C-4, and C-9 positions are still unknown. Moreover, the enzymes involved in the biosynthesis of propylene oxide remain unknown. More efforts are needed to elucidate the complete paclitaxel biosynthetic pathway.
Heterologous Production of Plant Diterpenoids
Using synthetic biology technology to produce active ingredients of medicinal plants in heterologous expression systems has great advantages, including short production cycles, independence from environmental factors, easy separation and purification, and easy to perform large-scale fermentation.
A variety of pharmaceutical ingredients have been produced de novo in chassis organisms. Keasling’s group has constructed a high-yield yeast engineering strain for the synthesis of the precursor of artemisinin, artemisinic acid. Then artemisinin can be obtained through a series of simple chemical reactions. The yield of artemisinic acid in a 100 m3 fermenter is equal to that of 8,000 acres of agricultural cultivation [111]. Chinese researchers have cooperated to construct a "Ginseng-Yeast" cell factory that can simultaneously produce oleanolic acid, protopanaxadiol, and protopanaxatriol, which enables the yeast to synthesize sapogenin [112]. L-homoserine is used as an important intermediate and additive in the industry. Zhang
Heterologous Production in E. coli
Ajikumar
Heterologous Production in Yeasts
Yeasts are also popular hosts for reconstituting the biosynthetic pathways of plant secondary metabolites. Many membrane-bound enzymes involved in plant metabolism, especially CYP450s, are relatively easier to be functionally expressed in yeast.
Hu
Wei
Kildegaard
Other Chassis Cells
In addition to
Summary and Scope
With their amazing structural diversity and broad biological activities, natural products have provided many pharmaceutical agents and intermediates for human beings. Terpenoids are a large group of natural products, among which diterpenoids are rich in structure and have attracted human attention because of their extensive biological activities like antineoplastic activities, anti-inflammatory activities, antibacterial abilities, and many other strong functions. However, their complex and varied structures pose challenges in terms of separation and purification. With the increased demand for bioactive diterpenes, extracting diterpenes from plants is far from satisfying human needs. By analyzing the biosynthetic pathways for plant diterpenes, the yield of diterpenoids can be effectively improved by rational construction and optimization of the biosynthetic pathway in heterologous hosts. The biosynthetic pathways of several diterpenes have been completely or partially resolved in recent years. However, due to the complex structures of diterpenes and the discontinuity of gene clusters in plants, it is a great challenge to elucidate the diterpene biosynthetic pathways. The development of next-generation sequencing techniques and bioinformatic analysis can effectively reduce the candidate genes involved in the biosynthesis of plant diterpenoids. By screening candidate genes in well-established chassis, such as
Significant progress has been made in the production of diterpenoids in microorganisms recently. Representative studies such as: through the pathway mining, analyzing and assembling the biosynthesis of steviol glycosides, the heterologous synthesis of plant-derived steviol glycosides was realized in
In conclusion, obtaining genes related to the diterpenoid biosynthetic pathway from plant genomes is the basis for producing active components utilizing synthetic biology. The metabolic pathway of engineering bacteria was redesigned and constructed using synthetic biology technology, and functional gene elements were assembled into chassis organisms to build efficient cell factories. As research on diterpene components deepens, the demand for diterpenes in medical and natural environment outpaces supply. This comprehensive strategy provides ideas and methods not only for the biosynthesis of diterpenoids but also for other kinds of natural products. With the unlocking of the bottleneck and limiting factors in the biosynthesis of diterpenes, the production and utilization of diterpenoids will also make more significant progress.
Abbreviations
TCM: traditional Chinese medicine. GGPP: (
Conflict of Interest
The authors have no financial conflicts of interest to declare.
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Related articles in JMB
Article
Review
J. Microbiol. Biotechnol. 2024; 34(8): 1563-1579
Published online August 28, 2024 https://doi.org/10.4014/jmb.2402.02014
Copyright © The Korean Society for Microbiology and Biotechnology.
Advances in the Structures, Pharmacological Activities, and Biosynthesis of Plant Diterpenoids
Leilei Li1, Jia Fu2, and Nan Liu1*
1School of Chinese Materia Medica, Tianjin University of Traditional Chinese Medicine, Tianjin 301617, P.R. China
2State Key Laboratory of Component-based Chinese Medicine, Tianjin University of Traditional Chinese Medicine, Tianjin 301617, P.R. China
Correspondence to:Liu Nan, liunanlnn@tjutcm.edu.cn
Abstract
More and more diterpenoids have attracted extensive attention due to the diverse chemical structures and excellent biological activities, and have been developed into clinical drugs or consumer products. The vast majority of diterpenoids are derived from plants. With the long-term development of plant medicinal materials, the natural resources of many plant diterpenoids are decreasing, and the biosynthetic mechanism of key active components has increasingly become a research hotspot. Using synthetic biology to engineer microorganisms into "cell factories" to produce the desired compounds is an essential means to solve these problems. In this review, we depict the plant-derived diterpenoids from chemical structure, biological activities, and biosynthetic pathways. We use representative plant diterpenes as examples to expound the research progress on their biosynthesis, and summarize the heterologous production of plant diterpenoids in microorganisms in recent years, hoping to lay the foundation for the development and application of plant diterpenoids in the future.
Keywords: Plant diterpenoids, chemical structures, pharmacological activities, biosynthetic pathways, synthetic biology, heterologous production
Introduction
Diterpenes are widely distributed in plants, fungi, and marine organisms. The backbones of diterpenes are composed of four isoprene units that join head-to-tail. The complexity and diversity of diterpenoids make them rich in biological activities. Several plant diterpenes have been developed into clinical drugs to treat various diseases. For example, paclitaxel from
Currently, various diterpenoids have been discovered in plants, showcasing higher diversity and content compared to animals and microorganisms. It seems that plant-derived diterpenes have higher purity and biological activity [6-8]. Therefore, the primary sources of diterpenoids rely on plant extraction. However, the low content of diterpenoids in plants, the long growth cycle of plants, and the complicated extraction and purification processes for diterpenes do not satisfy the requirements for green and sustainable diterpenoid production. In recent years, the chemical synthesis of many diterpenoids has been accomplished. However, due to the diverse structure of diterpenoids, the yield of total synthesis is often low and is not practical for industrial production. Therefore, exploring the biosynthetic pathways for plant diterpenoids and using the synthetic biology strategy to design and engineer microbial strains to yield plant diterpenoids has been recognized as a promising method to produce these crucial compounds (Fig. 1).
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Figure 1. Comprehensive research strategies for plant diterpene resources, including their structures, biosynthetic pathway, heterologous production and biological activity (Adapted from [96, 126-130]).
With the explosion of genome sequencing data and the increasing characterization of biosynthetic enzymes, the biosynthetic pathways of many diterpenoids have been elucidated, which lays the foundation for the heterologous production of diterpenoid products. Through metabolic engineering, synthetic biology, and fermentation engineering, researchers have developed environmentally friendly biosynthetic strategies and designed efficient cell factories to produce high-value diterpenoids (Fig. 1). Various microorganisms, including
This review first describes the chemical structures and pharmacological activities of plant diterpenoids. Then we summarize the research progress of the biosynthetic pathways of a few diterpenes and the heterologous production of plant diterpenoids in microbial cell factories. We predict the prospects and development trends of synthetic biology in producing plant diterpenoids, aiming to provide more insights for future research and application of diterpenoids.
Classification of Plant Diterpenoids
According to the number of skeleton rings, plant diterpenoids can be divided into acyclic, monocyclic, dicyclic, tricyclic, tetracyclic, and macrocyclic subfamilies. Besides sesquiterpenoids, diterpenoids have the most abundant structure types in terpenoids, which can be generated through the fracture, carbon bond shift, and skeleton rearrangement (Fig. 2). In this paper, we classify diterpenoids in plants based on the skeleton ring system.
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Figure 2. The different skeleton types of plant diterpenoids and the corresponding compounds.
Acyclic and monocyclic diterpenoids (cyan), bicyclic diterpenoids (blue), tricyclic diterpenoids (yellow), tetracyclic diterpenoids (pink), and macrocyclic diterpenoids(green).
Acyclic and Monocyclic Diterpenoids
Acyclic and monocyclic diterpenoids are relatively rare in plants. Still, they have essential biological functions. Phytol is an acyclic diterpene commonly found in the leaves of green plants [12]. It acts as a side chain and binds to magnesium-containing porphyrins to form chlorophyll. At the same time, phytol is used as a precursor for the biosynthesis of vitamins E and K1 [13]. Recently, three new acyclic diterpenoids with strong anti-inflammatory activity, aphanamoxenes A, B, and C, were isolated from the seed of
Bicyclic Diterpenoids
Bicyclic diterpenoids are mainly divided into the labdane and clerodane families. In addition, bicyclic diterpenoids can combine with other structure types to form new compounds, such as ginkgolides composed of sesquiterpene and diterpene structures [16].
Labdanes. Labdanes have naphthane as the parent nucleus and possess various structures formed by rearranging and C–C bond cleavage of the parent nucleus. They are divided into the labdane (
Clerodanes. Clerodanes have attracted attention because of their insect antifeedant activity. Most of them were found in Angiosperm. The clerodanes can be divided into two classes, clerodane and
Others. Ginkgolides were isolated from
Tricyclic Diterpenoids
Tricyclic diterpenoids are abundant in nature and rich in biological activities, such as anti-tumor, anti-inflammatory, and antibacterial. Tricyclic diterpenoids mainly include abietane, pimarane, rosane, cassane, totarane, and spongian. They can be divided into two types: aromatic and non-aromatic, according to the structural characteristics of their C-ring skeleton.
Abietanes. In the 19th century, people found the first abietane diterpene from colophony, abietic acid. It has antitumor, antioxidant, and other activities [24]. Studies have shown that methyl abietate, abietinol, and abietinal can be obtained by modifying the carboxyl at the C-18 position through esterification, reduction, and oxidation. Through assessing their cytotoxicity, found that among them, methyl abietate showed the highest cytotoxicity, and abietinol presented weaker cytotoxicity [25]. Carnosic acid is also one of the representative tricyclic diterpenes, which was isolated from
Pimaranes. Like abietanes, pimaranes were also originally isolated from colophony. They can be divided into four types, namely, pimarane, isopimarane,
Others. In addition to the two tricyclic diterpenes described above, there are several other types, such as rosane, cassane, totarane, and spongian. Totarol is a representative totarane diterpene isolated from the duramen of
Tetracyclic Diterpenoids
Tetracyclic diterpenoids can be classified into two types. The tetracyclic diterpenes with a C-8 bridging ring include kaurane,
Kauranes. Kaurene diterpenoids were initially discovered from the essential oil of the leaves of
Gibberellins. Gibberellins (GAs) are a family of important hormones that control plant growth and development. GAs share the gibberellane backbone and differ by changing the number and position of double bonds and hydroxyl groups. GAs were initially isolated from
Atisanes. Atisane diterpenoids mainly exist in nature as
Others. Phyllocladanes are rare in nature, and their structures are similar to kauranes. Calliterpenone and its analogs isolated from
Macrocyclic Diterpenoids
Taxanes. At present, more than 500 taxanes have been found. They can be divided into four subfamilies,
Due to the side effects and poor water solubility of paclitaxel, plenty of research has been focused on its structure modification in recent years. Bouchet
Others. Macrocyclic diterpenes are a class of compounds whose molecular skeleton consists of four isoprene units and has a ring structure of more than six members. Their structures are complex, and generally have variety of functional groups, with unique biological activities and pharmacological effects, such as cytotoxicity, anti-tumor, antiviral and anti-inflammatory activities. These compounds are mainly found in plants of Euphorbiaceae and Thymelaeceae [7]. Such as cembranes, tigliane, casbanes, and jatrophanes, which have become the research hotspot due to their different skeletal structures and extensive biological activities (Fig. 2). For example, the ingenol extracted from
Cembranes can be divided into isopropyl, five-, six-, seven-, and eight-membered lactone rings, ring-opening, reduced-carbon type, etc. A new cembrane diterpene, named (-)-(1S)-15-hydroxy-18-carboxycembrene, was isolated from the roots of
Pharmacological Activities of Plant Diterpenoids
Diterpenoids have a wide range of biological activities due to their complex and diverse structure. They are commonly used to treat cardiovascular diseases, hypertension[56], and diabetes [57, 58]. These compounds also have antineoplastic, anti-inflammatory, antibacterial, antiviral [59], antioxidative [60], and antimalarial activities [61]. Herein, our paper systematically summarizes the pharmacological studies on diterpenoids.
Antineoplastic Activity
The antitumor effect is one of the most interesting pharmacological activities of diterpenes. Paclitaxel, triptolide, and
It is well known that non-small cell lung cancer (NSCLC) is one of the most severe diseases, it is characterized by a high incidence of metastasis and poor survival, and epithelial-to-mesenchymal transition (EMT) is a major factor inducing tumor metastasis. Deng
In recent years,
Anti-Inflammatory Activity
The pathogenesis of numerous diseases is closely linked to inflammation. Diterpenes exhibit significant anti-inflammatory properties, suggesting their potential therapeutic efficacy in a range of conditions including neuroinflammatory diseases, atherosclerosis, liver damage, and colitis. The inflammatory response induced by cytokines and chemokines can cause various inflammatory diseases, and anti-inflammatory drugs are an important therapeutic strategy. Tanshinone IIA and cryptotanshinone have significant anti-inflammation activities. The research showed that tanshinone IIA plays an anti-inflammatory role by inhibiting the expression of inflammatory cytokines and TLR2, NF-kappa B, and ICAM-1 [67].
(1
Wang
Antibacterial Activity
Some diterpenoids have a broad antimicrobial spectrum, low toxicity, and high antibacterial activity. For instance,
Siddique
Others
In addition to the above common activities, diterpenoids have numerous other biological activities. Such as andrographolide, 14-dehydroxyandrographolide-12-sulfonic acid sodium salt, and 14-
Due to its high sweetness and low calorie, rubusoside is used as a sweetener. It also can combine with resveratrol, curcumin, and other anticancer drugs to increase solubility, such as by 33-fold of resveratrol and 60-fold of curcumin [74, 75].
GAs is a large group of endogenous hormones that can regulate plant vegetative and reproductive growth. They play important roles in promoting seed germination, root growth, stem and leaf growth, flowering, and fruit ripening [76]. Many diterpenoids showed noteworthy neuroprotective effects in cell injury models induced by H2O2 and MPP+ [77], they can activate the autophagia and trigger the parkin/IKK/p65 pathway to increase the OPA1. They can also show a neuroprotective effect by inhibiting the COX-2 pathway and MAPK pathway [78].
Studies on the Biosynthesis of Plant Diterpenoids
In plants, all terpenoids are formed by the condensation of five-carbon unit isopentenyl pyrophosphate (IPP) and dimethylallyl pyrophosphate (DMAPP) to form the precursor geranyl diphosphate (GPP), farnesyl diphosphate (FPP), and (
-
Figure 3. (A) Biosynthesis of the IPP and DMAPP via the MVA pathway (purple) and MEP pathway (green).
Enzyme abbreviations are as follows; AACT, acetoactl-CoA thiolase. HMGS, hydroxymethylglutaryl-CoA synthase. HMGR, hydroxymethylglutaryl-CoA reductase. MVK, mevalonate kinase. PMK, phosphmevalonate kinase. MVD, mevalonate 5- phosphate decarboxylase. IDI, isopentenyl diphosphate isomerase. DXS, 1-deoxy-D-xylulose 5-phosphate synthase. DXR, 1- deoxy-D-xylulose 5-phosphate reductoisomerase. MCT, 2C-methyl-D-erythritol 4-phosphate cytidyltransferase. CMK, 4- (cytidine 5’-diphospho)-2C-methyl-D-erythritol kinase. MDS, 2C-methyl-D-erythritol-2,4’-cyclodiphosphate synthase. HDS, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase. HDR, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase. For intermediates, GAP, D-glyceralfehyde-3-phosphate. DXP, 1-deoxy-D-xylulose 5-phosphate. MEP, 2C-methyl-D-erythritol 4- phosphate. CDP-cytidyl diphosphate. MEcDP, 2C-methyl D-erythritol-2,4-cyclodiphosphate. HMBDP-1-hydroxy-2-methyl- 2-(E)-butenyl-4-diphosphate. OP and OPP signify mono- and diphosphate moieties, respectively. Pi represents inorganic phosphate (B) Biosynthetic pathway of forskolin.
After synthesizing IPP and DMAPP, geranylgeranyl pyrophosphate synthase (GGPPS) catalyzes the synthesis of GGPP, a precursor common to all diterpenoids, by three molecules of IPP and one molecule of DMAPP. GGPP could form the skeletons of various diterpenes under the action of different diterpene synthases. Then these skeletons are converted into different compounds through a series of enzymatic reactions, such as hydroxylation, peroxidation, methylation, glycosylation, and cleavage rearrangement. According to the functional domains of diterpene synthases, they can be divided into Class I, Class II, and Class I/ Class II diterpene synthases, Class I and Class II diterpene synthases contain DDXXD and DXDD domains, respectively. Class I/ Class II diterpene synthases contain both types of characteristic domains, having the characteristic of catalyzing two reactions at the same time. For example, abietadiene synthase isolated from
Biosynthesis of Forskolin
Forskolin is a diterpenoid belonging to the labdane. It is produced uniquely to the root species of
In plants, GGPP is synthesized through the MEP pathway. The diterpene synthases are used to subsequently generate the basic diterpene skeleton, and finally, forskolin is obtained under a series of oxidases and acetyltransferases (Fig. 3B). Zerbe
-
Figure 4. Biosynthetic pathway of tanshinones.
Dash arrowhead indicates that the enzymes have not been identified.
Biosynthesis of Tanshinones
Tanshinones are a class of lipid-soluble abietane found in
In
There are many unknowns in the biosynthetic pathways of tanshinones and their intermediates. In recent years, many reports have paid more attention to the regulatory factors in the biosynthetic pathway. For example, Deng
Biosynthesis of Steviol Glycosides
STE-G are high-sweetness and zero-calorie sweeteners isolated from
KA is converted to steviol by adding a hydroxyl at the C13 under the action of ent‐kaurenoic acid 13‐hydroxylase (KA13H). Steviol is the common precursor of all STE-G. Under the catalysis of glycosyltransferase
-
Figure 5. Biosynthetic pathway of steviol glycosides.
The most widely used STE-G on the market is Reb A, which has high sweetness and safety and has passed the safety certification of the United States Food and Drug Administration. However, Reb A has a bitter aftertaste. Compared to Reb A, Reb D and Reb M have one or two more glucose molecules attaching to the C-19 glycosyl, so the bitterness is significantly reduced. Wang
Biosynthesis of Paclitaxel
Paclitaxel is mainly isolated from the bark of
-
Figure 6. Biosynthetic pathway of paclitaxel.
Blue font indicates that the enzymes have not been identified.
-
Table 1 . Overview of production of plant diterpenoids in different hosts..
Host Diterpene Metabolic engineering strategies Titer (mg/l) Reference E. coli ent -kaurane◆ Screening of optimal GGPPS and E. coli host
◆ Overexpression of three key enzymes in MEP pathway
◆ Culturing strain in a bioreactor578 [114] E. coli Steviol ◆ Optimization of the upstream pathway
◆ Screening of properE. coli host and kaurene oxidase
◆ Truncating the N terminus-modified mutants of kaurene oxidase and attachment of soluble tags
◆ Codon optimization and increasing the copy number ofCPR
◆ Introduction of cytochrome b5 (CYB5)
◆ Site-directed mutation ofAt CYP714A21073.8 [115] E. coli Taxadiene ◆ Modularization of the taxadiene metabolic pathway
◆ Using systematic multivariate analysis to achieve a balance of the two modules1020 [9] S. cerevisiae Miltiradiene ◆ Overexpression of the pathway genes
◆ Downregulation ofErg9
◆ Knocked out transcriptional regulators
◆ Optimization of the medium
◆ Fusion ofCf TPS1 andSm KSL1
◆ Protein modification ofSm KSL13500 [117] S. cerevisiae Forskolin ◆ Fusion of BTS1 andERG20 F96C
◆ Overexpression ofHMG1
◆ Truncating the N terminus ofCf CPR
◆ Fusion ofCf CYP76AHs and tR~tB
◆ Regulation of copy numbers of the target genes, amplification of the endoplasmic reticulum (ER) area and cofactor metabolism enhancement
◆ Fed-batch fermentation21.47 [119] S. cerevisiae Carnosic acid ◆ Overexpression of BTS1 -GGGS-ERG20 F96Cp
◆ Codon-optimization, N-terminus truncation, and fusion oftSm CPS andtSm KSL
◆ UsedSm CPR fromS. miltiorrhiza
◆ Co-expression ofSm CPR~t28Sp Cytb5 fusion protein and CYP76AH1
◆ Overexpression ofSc CTA1 andSc CTT1
◆ Overexpression ofINO2 , theHEM3 (heme synthase) gene, and the NADH kinase gene (POS5 )
◆ Batch and fed-batch fermentation24.65 [120] S. cerevisiae Rubusoside ◆ KS from G. fujikuroi , KO, CPR1, UGT74G1, and UGT85C2 fromS. rebaudiana , KAH fromArabidopsis thaliana
◆ Overexpression oftHMG1 andIDI1
◆ Site-directed mutation ofFPS F112A
◆ Replacing promoter ofINO2 with a stronger one
◆ Overexpression of the efflux-pumpPDR11 and the stress-response factorMSN4
◆ Knocking outGAL7 and overexpression ofPGM2 1368.6 [94] Y. lipolytica Gibberellin ◆ Downregulating the endogenous squalene synthase gene
◆ ChoosingAt CPS,At KS,At KO,At ATR2 angYl Cyb5 to producingent -KA
◆ Codon-optimization of all genes
◆ GeneAt C20ox andAt C3ox were expressed under the control of the strong promotorsPr Exp andPr Tefintron, respectively
◆ N-terminus truncation ofAt CPS,At KS, andAt KO and fusion of CPS and KSGA4 17.29
GA3 2.93[38] C. reinhardtii Sclareol ◆ Codon optimization of terpene synthase
◆ All transgenes were driven by the PSAD promoter and FDX1 terminator
◆ Using GGPPS fromC. reinhardtii and sclareol synthase fromS. sclarea 656 [121]
GGPP is first cyclized to taxadiene by the taxadiene synthase (TASY), a Class I diterpene synthase. Then taxadiene undergoes a series of hydroxylation at the C-1, C-2, C-4, C-5, C-7, C-9, C-10, and C-13 positions. The enzymes catalyzing hydroxylation at five positions of taxadiene have been successfully identified [98-100]. Stefan
Formation of the side chain of paclitaxel is the rate-limiting step in paclitaxel biosynthesis. With L-
By analyzing the functions of the enzymes identified so far, we can see that the hydroxylation and acylation on the parent nucleus are alternate, and the order of most reactions still needs to be determined. There are about eight CYP450 enzymes involved in paclitaxel biosynthesis, but only five have been identified. The corresponding CYP450 hydroxylases catalyzing reactions at the C-1, C-4, and C-9 positions are still unknown. Moreover, the enzymes involved in the biosynthesis of propylene oxide remain unknown. More efforts are needed to elucidate the complete paclitaxel biosynthetic pathway.
Heterologous Production of Plant Diterpenoids
Using synthetic biology technology to produce active ingredients of medicinal plants in heterologous expression systems has great advantages, including short production cycles, independence from environmental factors, easy separation and purification, and easy to perform large-scale fermentation.
A variety of pharmaceutical ingredients have been produced de novo in chassis organisms. Keasling’s group has constructed a high-yield yeast engineering strain for the synthesis of the precursor of artemisinin, artemisinic acid. Then artemisinin can be obtained through a series of simple chemical reactions. The yield of artemisinic acid in a 100 m3 fermenter is equal to that of 8,000 acres of agricultural cultivation [111]. Chinese researchers have cooperated to construct a "Ginseng-Yeast" cell factory that can simultaneously produce oleanolic acid, protopanaxadiol, and protopanaxatriol, which enables the yeast to synthesize sapogenin [112]. L-homoserine is used as an important intermediate and additive in the industry. Zhang
Heterologous Production in E. coli
Ajikumar
Heterologous Production in Yeasts
Yeasts are also popular hosts for reconstituting the biosynthetic pathways of plant secondary metabolites. Many membrane-bound enzymes involved in plant metabolism, especially CYP450s, are relatively easier to be functionally expressed in yeast.
Hu
Wei
Kildegaard
Other Chassis Cells
In addition to
Summary and Scope
With their amazing structural diversity and broad biological activities, natural products have provided many pharmaceutical agents and intermediates for human beings. Terpenoids are a large group of natural products, among which diterpenoids are rich in structure and have attracted human attention because of their extensive biological activities like antineoplastic activities, anti-inflammatory activities, antibacterial abilities, and many other strong functions. However, their complex and varied structures pose challenges in terms of separation and purification. With the increased demand for bioactive diterpenes, extracting diterpenes from plants is far from satisfying human needs. By analyzing the biosynthetic pathways for plant diterpenes, the yield of diterpenoids can be effectively improved by rational construction and optimization of the biosynthetic pathway in heterologous hosts. The biosynthetic pathways of several diterpenes have been completely or partially resolved in recent years. However, due to the complex structures of diterpenes and the discontinuity of gene clusters in plants, it is a great challenge to elucidate the diterpene biosynthetic pathways. The development of next-generation sequencing techniques and bioinformatic analysis can effectively reduce the candidate genes involved in the biosynthesis of plant diterpenoids. By screening candidate genes in well-established chassis, such as
Significant progress has been made in the production of diterpenoids in microorganisms recently. Representative studies such as: through the pathway mining, analyzing and assembling the biosynthesis of steviol glycosides, the heterologous synthesis of plant-derived steviol glycosides was realized in
In conclusion, obtaining genes related to the diterpenoid biosynthetic pathway from plant genomes is the basis for producing active components utilizing synthetic biology. The metabolic pathway of engineering bacteria was redesigned and constructed using synthetic biology technology, and functional gene elements were assembled into chassis organisms to build efficient cell factories. As research on diterpene components deepens, the demand for diterpenes in medical and natural environment outpaces supply. This comprehensive strategy provides ideas and methods not only for the biosynthesis of diterpenoids but also for other kinds of natural products. With the unlocking of the bottleneck and limiting factors in the biosynthesis of diterpenes, the production and utilization of diterpenoids will also make more significant progress.
Abbreviations
TCM: traditional Chinese medicine. GGPP: (
Conflict of Interest
The authors have no financial conflicts of interest to declare.
Fig 1.
Fig 2.
Fig 3.
Fig 4.
Fig 5.
Fig 6.
-
Table 1 . Overview of production of plant diterpenoids in different hosts..
Host Diterpene Metabolic engineering strategies Titer (mg/l) Reference E. coli ent -kaurane◆ Screening of optimal GGPPS and E. coli host
◆ Overexpression of three key enzymes in MEP pathway
◆ Culturing strain in a bioreactor578 [114] E. coli Steviol ◆ Optimization of the upstream pathway
◆ Screening of properE. coli host and kaurene oxidase
◆ Truncating the N terminus-modified mutants of kaurene oxidase and attachment of soluble tags
◆ Codon optimization and increasing the copy number ofCPR
◆ Introduction of cytochrome b5 (CYB5)
◆ Site-directed mutation ofAt CYP714A21073.8 [115] E. coli Taxadiene ◆ Modularization of the taxadiene metabolic pathway
◆ Using systematic multivariate analysis to achieve a balance of the two modules1020 [9] S. cerevisiae Miltiradiene ◆ Overexpression of the pathway genes
◆ Downregulation ofErg9
◆ Knocked out transcriptional regulators
◆ Optimization of the medium
◆ Fusion ofCf TPS1 andSm KSL1
◆ Protein modification ofSm KSL13500 [117] S. cerevisiae Forskolin ◆ Fusion of BTS1 andERG20 F96C
◆ Overexpression ofHMG1
◆ Truncating the N terminus ofCf CPR
◆ Fusion ofCf CYP76AHs and tR~tB
◆ Regulation of copy numbers of the target genes, amplification of the endoplasmic reticulum (ER) area and cofactor metabolism enhancement
◆ Fed-batch fermentation21.47 [119] S. cerevisiae Carnosic acid ◆ Overexpression of BTS1 -GGGS-ERG20 F96Cp
◆ Codon-optimization, N-terminus truncation, and fusion oftSm CPS andtSm KSL
◆ UsedSm CPR fromS. miltiorrhiza
◆ Co-expression ofSm CPR~t28Sp Cytb5 fusion protein and CYP76AH1
◆ Overexpression ofSc CTA1 andSc CTT1
◆ Overexpression ofINO2 , theHEM3 (heme synthase) gene, and the NADH kinase gene (POS5 )
◆ Batch and fed-batch fermentation24.65 [120] S. cerevisiae Rubusoside ◆ KS from G. fujikuroi , KO, CPR1, UGT74G1, and UGT85C2 fromS. rebaudiana , KAH fromArabidopsis thaliana
◆ Overexpression oftHMG1 andIDI1
◆ Site-directed mutation ofFPS F112A
◆ Replacing promoter ofINO2 with a stronger one
◆ Overexpression of the efflux-pumpPDR11 and the stress-response factorMSN4
◆ Knocking outGAL7 and overexpression ofPGM2 1368.6 [94] Y. lipolytica Gibberellin ◆ Downregulating the endogenous squalene synthase gene
◆ ChoosingAt CPS,At KS,At KO,At ATR2 angYl Cyb5 to producingent -KA
◆ Codon-optimization of all genes
◆ GeneAt C20ox andAt C3ox were expressed under the control of the strong promotorsPr Exp andPr Tefintron, respectively
◆ N-terminus truncation ofAt CPS,At KS, andAt KO and fusion of CPS and KSGA4 17.29
GA3 2.93[38] C. reinhardtii Sclareol ◆ Codon optimization of terpene synthase
◆ All transgenes were driven by the PSAD promoter and FDX1 terminator
◆ Using GGPPS fromC. reinhardtii and sclareol synthase fromS. sclarea 656 [121]
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