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Research article
Lignocellulolytic Enzymes Production by Four Wild Filamentous Fungi for Olive Stones Valorization: Comparing Three Fermentation Regimens
1Moulay Ismail University of Meknès, Laboratory of Biotechnology and Bioresources Valorization, BP 11201, Zitoune Meknes City, Morocco
2Moulay Ismail University of Meknès, Cluster of Competency «Agri-food, Safety and Security» IUC VLIR-UOS, Marjane 2, BP 298, Meknes City, Morocco
3Paris-Saclay University, CentraleSupélec, European Center of Biotechnology and Bioeconomy (CEBB) - LGPM, 3 rue des Rouges Terres, 51110 Pomacle, France
4Ghent University, Faculty of Bioscience Engineering, Department of Plants and Crops, Valentin Vaerwyckweg 1, Schoonmeersen - gebouw C 9000 Ghent, Belgium
5Sultan Moulay Sliman University, Higher School of Technology, Laboratory of Biotechnology, Bioresources, and Bioinformatics (3BIO), 54000 Khenifra, Morocco
J. Microbiol. Biotechnol. 2024; 34(5): 1017-1028
Published May 28, 2024 https://doi.org/10.4014/jmb.2312.12048
Copyright © The Korean Society for Microbiology and Biotechnology.
Abstract
Keywords
Graphical Abstract
Introduction
Worldwide, olive oil production has increased threefold in the previous 60 years, reaching 3,098,500 tons in the 2021/22 crop year, as estimated by the International Olive Council [1]. This sector generates an enormous quantity of by-products with a noticeable environmental footprint and applications with less added value each year. Representing about ten percent of the weight of the olive fruit, the olive stones (OS) are the solid residue of the olive oil extraction process. They are obtained in the form of small, crushed fragments after the separation of the remaining pulp and a secondary extraction of the residual oil [2, 3]. The primary application of this biomass is in the generation of electric power or heat through combustion. Recently, it has drawn the attention of researchers because of its valuable composition rich in lignocellulose (LC), namely, cellulose, hemicellulose, and lignin [4], phenols, fats, proteins, and free sugars [5]. After processing, this by-product, also called olive pits or kernels, can serve as a bioenergy feedstock [6], animal feed [7], and nutritional supplement [8], in the cosmetic and pharmaceutical industries [9, 10]. It can also be employed as a precursor to produce activated carbon to be used as an adsorbent [11].
In the biorefinery concept, OS are recognized as a type of LC biomass with significant potential for the production of fuels and bio-chemicals, thus being a promising raw material [12, 13]. Green and safe processes such as enzymatic techniques are used to ensure the efficient exploitation of this valuable biomass. Enzymatic lignocellulose decomposition, a process that consists of converting LC into oligomeric and monomeric units, the substrate complexity requires the use of specialized enzymes [14]. These enzymes are mainly composed of cellulases, hemicellulases, ligninases, and auxiliary enzymes responsible for the degradation of the plant cell wall constituents [15]. So far, many lignocellulolytic enzymes produced by microorganisms, have been identified and clustered into various families in the Carbohydrate-Active EnZyme database (CAZyme), taking their sequence and structural-functional characteristics as a basis for their classification [16].
In the natural environment, fungi stand out among microorganisms due to their remarkable proficiency in degrading LC. This proficiency stems from their capacity to release a wide array of hydrolytic and oxidative extracellular enzymes, which are designed to selectively target the distinct constituents of plant cell walls [17]. Three fungal groups responsible for lignocellulose depolymerization have been described: white‐rot, brown‐rot, and soft‐rot fungi [18]. The cellulose degradation process is performed by glycoside hydrolase (GH) enzymes that possess synergistic catalytic activity. Cellulases are classified into three prevalent groups: endoglucanases (EG)(endo-1-4-β-glucanase; EC 3.2.1.4), exoglucanases (EC 3.2.1.91) and β-glucosidases (EC 3.2.1.21) in charge of β-1,4-glycosidic linkage hydrolysis between glucose units within the cellulose fiber [19]. Hemicellulose hydrolysis requires essentially endo‐1,4‐β‐xylanases (EC 3.2.1.8) for the generation of oligosaccharides, and exo‐1,4‐β‐xylosidase (EC 3.2.1.37) that release xylose by cleavage of oligosaccharides [18]. In terms of lignin consumption, the main groups of ligninolytic enzymes involved include laccases (EC 1.10.3.2; CAZy AA1), manganese-dependent peroxidases (EC 1.11.1.13; CAZy AA2), lignin peroxidases (EC 1.11.1.14; CAZy AA2) and versatile peroxidases (EC 1.11.1.16; CAZy AA2) [20]. Generally, the lignin degradation process is accomplished by white‐rot fungi as secondary metabolism, or due to the limited disposal of carbon, nitrogen, or sulfur [21]. Nowadays, lignocellulolytic enzymes are largely used in the food industry for various applications, such as product texturizing and flavoring, particularly during the processing of fruits and vegetables [22]. Additional areas of interest include biorefinery, textiles, animal feed, and many other sectors [23].
The fermentation process is among the main conditions that influence microbial growth, enzymatic expression, and productivity [24, 25]. Many fermentation regimens have been described representing both benefits and barriers. Solid-state (SSF) and submerged fermentations (SmF) are the common conventional processes widely employed for lignocellulolytic enzyme production. The first one offers remarkable strengths regarding the suitability of LC biomass as a substrate under growth requirements closely reflecting the natural environment in which fungi are adapted. This positive alignment leads to better microbe/ substrate interaction reflected by greater enzyme titers. Nevertheless, the SSF presents complexities in terms of control in scaling-up processes [26, 27]. In comparison, SmF shows great promise. The presence of established methods for monitoring and controlling bioreactors makes it the favored approach for industrial enzyme production. Despite yielding more diluted products, the outcome of the SmF process can be directly utilized as enzyme cocktails by various industries [28, 29]. Based on the limitations of these two methods, sequential fermentation (SF), also called sequential solid-state and submerged fermentation, has been developed as an economical and successful approach. This approach involves using LC as an induction substrate for pre-culture preparation, which is achieved by an SSF step followed by a switch to SmF. Combining the advantages of the two techniques, the process promotes greater enzyme production and improves both substrate assimilation and fungal growth morphology [30-32].
In Morocco, according to official reports from the Ministry of Agriculture, the olive tree dominates the culture of fruit species, accounting for 65% of the national tree area [40]. The olive oil sector is a flagship field in the Fez Meknes region, one of the two regions in the kingdom where 54% of the olive oil area is concentrated. Olive oil processing generates a significant quantity of by-products, such as OS, which represent an impressive source of bioconstituents. Previous research [41] revealed that this by-product collected from our study region, exhibited a significant oxygen content of approximately 35.66 ± 0.71%, indicating its recalcitrant nature. Besides, OS have attracted researchers’ interest due to their valuable composition rich in LC materials, including cellulose (27.1-36.4%), hemicellulose (24.5-32.2%), and lignin (26.0-40.4%) [42], making them promising sources for enzyme production.
This study aims to explore the potential of local biomass and wild fungal species in green bioprocesses that require further attention and consideration at the national level.
Materials and Methods
Culture Media and Chemicals
All chemicals used in this study were supplied by Sigma Aldrich or Thermo Fisher Scientific (ACS grade, France). The high-purity enzyme substrates (≥ 95%) employed in enzymatic assays include 1st grade Whatman filter paper (WHA1001150), carboxymethyl cellulose (CMC; 419311-100G), cellobiose (C7252-25G), 2,2-azino-bis (3-ethylbenzothiazoline-6-sulfonic acid) (ABTS; A1888-5G), veratryl alcohol (VA; D133000-25G) and phenol red (114529-5G).
Commercial Potato Dextrose Agar (PDA) was used for in-plate fungal growth, subculturing, and conservation. For fermentation experiments, an adapted medium from Mendels & Sternberg [44] was used with the following composition: peptone; 0.5%, yeast extract; 0.2%, KH2PO4; 0.2%, (NH4)2SO4; 0.14%, Tween 80; 0.1%, salt solution; 0.1% (FeSO4·7H2O; 5 mg/l, CoCl2; 2 mg/l, MnSO4·H2O; 1.6 mg/l, ZnSO4·7H2O; 1.4 mg/l), CaCl2; 0.03%, urea; 0.03%, and MgSO4·7H2O; 0.02%, pH 5.5.
Fungal Strains
In our previous work [43], wild filamentous fungi were isolated from niche substrates in the Fez-Meknes region, and their lignocellulolytic potential was profiled. Four strains were selected for this study, namely:
Olive Stones Biomass
Olive stones (OS) were sampled directly from OLEA FOOD Company, the largest olive oil producer in the Fez Meknes region, which uses the two-phase extraction system. OS were collected in sterile bags, air-dried, ground using a Romer Analytical Sampling Mill (RAS, Romer Labs, Austria), sieved into a homogenous substrate using standard test sieves (≤ 500 μm, Retsch, France), and stored at 4°C until use in fermentations.
Fermentation Systems
A one-week-old culture of each fungus was used to prepare the inoculum. 10 ml of sterile distilled water with 0.01% Tween 80 was poured into the Petri dish to prepare a rich spore suspension. The inoculum solution was recovered, and its concentration was adjusted to 107 spores/ml using a Neubauer counting chamber. Each flask was supplemented with 107 spores of each fungal species separately. OS were used as the sole carbon source, and a substrate load of 5 g per flask was selected for all fermentations. Three fermentation systems were tried in our study to assess their effect on the production of lignocellulolytic enzymes by selected fungi. Namely, Solid-State Fermentation (SSF), Submerged Fermentation (SmF), and Sequential Fermentation (SF) were used. All flasks were incubated at 28°C for two weeks in complete darkness and static mode. All fermentations were conducted in duplicate.
Solid-State Fermentation (SSF) Each flask was supplemented with 5 g of OS as stated before. Moisture was adjusted to 75% by adding the liquid medium of Mendels & Sternberg. After sterilization and cooling, 107 spores of the four strains were added aseptically and separately. Every 48 h, proteins and extracellular enzymes were extracted by adding 50 ml of distilled water to the solid medium, shaking at 180 rpm for 1h at room temperature, filtering using Whatman No. 1 filter paper, and then centrifuging at 10,000 ×
Submerged Fermentation (SmF) Two hundred fifty milliliters (250 ml) flasks with a liquid working volume of 100 ml were prepared, where OS biomass was the sole carbon source. As for other fermentation systems, 107 spores of each fungus were separately inoculated, and the flasks were incubated in static mode for two weeks. At every sampling point, the liquid broth was recovered, filtered, and centrifuged using the same conditions as above. The supernatant was used for proteins and enzyme activities’ quantification according to standard protocols described in Section 2.5.
Sequential Fermentation (SF) Sequential fermentation consisted of two stages. The first was a SSF pre-culture period lasting for 2 days and conducted as described above. Afterward, a transition to SmF was done by aseptically adding 100 ml of sterile liquid medium. Growth conditions were kept the same as for other fermentation systems, and the supernatant was similarly prepared and used for analytical purposes.
Analytical Methods
Olive stones’ characterization The olive stones’ biomass was characterized for its composition and physicochemical properties. Moisture content was measured using a moisture analyzer (MD series, Japan). The insoluble ash content was determined with the traditional method, and the fiber content was quantified as three consecutive fractions using the standard protocols of Van Soest
Hemicellulose = NDF – ADF (1)
Cellulose = ADF – ADL (2)
Lignin = ADL – Insoluble Ash (3)
Evaluating the enzymatic potential of fungi
Lignocellulolytic index
As described by Pointing [46], an in-plate colorimetric method was used to assess endoglucanases (EG), lignin peroxidases, and manganese-dependent peroxidases (LiP and MnP), and laccase (Lac) enzymes’ production, respectively. Briefly, fungi were first grown on a solid medium containing the specific enzyme substrate at appropriate concentrations: 2% CMC for EG, 0.01% Azure B for LiP and MnP, and 0.1% ABTS for Lac. The cultures were monitored over 10 days, and positive enzyme production results were visualized as a yellow to dark orange halo zone around the colony for the EG (after staining with congo red and destaining with 1 M NaCl), a clearing zone for LiP & MnP, and a green coloration formation for Lac. Activity level was determined using the Enzyme Index (EI), calculated by dividing the halo diameter by the colony diameter [47]. Trials were performed twice to ensure accuracy.
Cellulolytic activities
Cellulolytic activities were assessed in three primary components as described by Ghose [48]: total cellulase activity using the Filter Paper Assay (FPA), endoglucanase activity using CMC as a substrate, and β-glucosidase activity using cellobiose. Briefly, enzyme extracts were buffered in 50 mM Na-citrate (pH 4.8) and supplemented with the specific substrate for each enzyme activity: strips (1 × 6 cm) of 1st grade Whatman filter paper, 2% CMC and 50 mM cellobiose for FPA, EG and BG activities, respectively. The reaction tubes were incubated at 50°C for 1 h (FPA) or 30 min (EG and BG), supplemented with 3 ml of modified dinitrosalicylic acid (DNS) reagent [49], incubated at 100°C for 15 min to stop the enzymatic reaction and enable color formation, and then cooled in an ice bath. Reducing sugars liberated during saccharification react under heat with DNS to form a yellow to dark orange color. Hence, they were quantified as D-glucose equivalent at 540 nm, and enzyme activities were calculated. One IU/ml is defined as the amount of enzyme capable of catalyzing the conversion of 1 μmol of substrate per minute under reaction conditions.
Ligninolytic activities
According to Hariharan and Nambisan [50], ligninolytic enzymes were measured as Lac, LiP, and MnP activities using the colorimetric method. Lac activity was monitored by following the oxidation kinetics of ABTS over time at 436 nm. Enzyme supernatant (0.6 ml) was buffered in 0.3 ml Na-citrate pH 4.5, and 0.1 ml of 0.3 mM ABTS was added to start the reaction. For LiP activity, enzyme extract was buffered in 0.1 M of Na-citrate pH 3, and 1 mM of VA was added as the enzyme substrate. The reaction was initiated by H2O2, and the change in absorbance was monitored at 310 nm. Finally, MnP activity was measured at 610 nm by mixing enzyme extract, 0.1 M Na-citrate buffer pH 5, 250 mM Na-lactate, 2 mM manganese sulfate, 0.5 % bovine serum albumin, 0.2 mM H2O2, and 0.1% phenol red as the substrate. The enzymatic activities were calculated from the generated curves and expressed in IU/ml, as defined earlier.
Proteins quantification Proteins were quantified to investigate the correlation between their concentration and enzyme activity, which may provide information on the dynamics of enzyme production and secretion, allowing for the assessment of enzyme performance independently of total protein concentration by determining the specific activity targeted in our perspective work. The assay was performed using the Lowry at a wavelength of 750 nm. Bovine serum albumin was used for the standard curve, with concentrations ranging from 0 to 100 μg/ml [51].
Experimental Methodology and Statistical Analysis of Data
A mixed-level full factorial design was conducted to assess the effect of the fungal strain and fermentation system on the expression of proteins, cellulolytic, and ligninolytic enzymes. Data were collected over time and expressed as mean ± standard deviation. ANOVA was used to test the different factors and their interactions. The relationships between quantitative variables were evaluated by the correlation method using the open-source R software [52]. Differences with a
Results and Discussion
Chemical Composition of the Olive Stones
The growth of fungi and their enzyme production is influenced by substrate complexity and composition, which can either enhance or inhibit enzyme activities [53]. Therefore, a chemical analysis was carried out to characterize the substrate selected for this work. Table 1 shows that OS exhibited a low moisture content. The residues were obtained from an olive oil production company that utilizes a two-phase system for processing. After being separated from the olive pulp and the extracted residual oil, the by-product undergoes a drying process. The reduced moisture content is beneficial for long-term preservation, as it minimizes microbial damage [54]. Additionally, the ash content found in the residues can provide a favorable environment for fungal growth.
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Table 1 . Chemical characterization of Moroccan olive stones. Data were expressed as mean ± standard deviation.
Component Content (%) Hemicellulose 27.2 ± 0.6 Cellulose 32.1 ± 0.6 Lignin 24.1 ± 1.6 Ash 2.8 ± 0.3 Moisture 10.1 ± 0.1
With a cellulose content of 32.10%, the LC waste of this study demonstrates a considerable ability to stimulate cellulase activity. The presence of lignin, accounting for 24.07%, is linked to cellulose hydrolysis accessibility. Nait Mbarek
Pretreatments can be applied to improve substrate amorphism and porosity by removing these structural compounds or reducing their recalcitrance [55]. The composition of the LC waste used in this study can be deemed suitable for diverse applications, capitalizing on both bioactive constituents and LC content. Additionally, this biomass is cost-effective, and its collection contributes to waste management, rendering it a feasible and sustainable alternative.
Kinetics of Lignocellulolytic Cocktail Production
Considering the diversity in growth rates and enzyme secretion patterns displayed by the fungal strains, the fermentation period emerged as a crucial element that considerably influenced the synthesis of lignocellulolytic enzymes. The systematic monitoring of enzyme activity over time was used to determine the optimum incubation period for each strain cultivated under the different culture methods.
According to the statistical evaluations, the incubation period had a statistically significant impact on the expression of enzymatic activities (
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Fig. 1. Kinetics of the cellulolytic and ligninolytic enzymes production under three fermentation modes.
Penicillium crustosum ,Fusarium nygamai ,Trichoderma capillare , andAspergillus calidoustus were cultivated during 15 days of dark incubation without agitation, and olive stones were used as substrate. Experiments were carried out in constant temperature (28°C), inoculum size (107 spores), moisture content (75%), and pH (5.5) conditions.
-
Fig. 2. Correlation matrix between quantitative variables at a confidence interval of 95%.
The correlation coefficient is statistically significant if the
p -value is < 0.05. Quantitative variables refer to Proteins, TC: Total cellulase activity. EG: Endoglucanase activity, BG: β-Glucosidase activity, LiP: Lignin Peroxidase activity, MnP: Manganese-dependant Peroxidase activity and Lac: Laccase activity.
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Fig. 3. Protein concentration from crude enzyme cocktails produced by
Penicillium crustosum ,Fusarium nygamai ,Trichoderma capillare , andAspergillus calidoustus using olive stones as substrate during 15 days of dark incubation. SSF, SmF, and SF refer to solid-state fermentation, submerged fermentation, and sequential fermentation, respectively.
The results are consistent with the study conducted by Salgado
Altogether, our research results underline the need to understand strain-specific differences and the influence of incubation time. They can contribute to a better comprehension of the dynamics of lignocellulolytic enzyme production, which is essential for optimizing industrial processes and biotechnological applications involving the degradation of LC biomass.
Characteristics and Enzymatic Profile of the Fungal Strains
The choice of fungus can greatly impact the overall efficiency of lignocellulose conversion. For this reason, researchers often explore the diversity of microbial strains to identify potent lignocellulolytic enzymes producers. In our study, the four fungal strains, including
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Table 2 . Enzymatic Index of four wild filamentous fungi isolated from Morocco.
Fungi Enzymatic Index (EI) EG LiP & MnP Lac Penicillium crustosum 2.4 ND 2 Fusarium nygamai 2 ND 3.3 Trichoderma capillare ND ND 2.8 Aspergillus calidoustus 2.9 ND 2.2 ND: Not detected.
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Table 3 . Effect of strain and fermentation mode on the optimum production of cellulolytic and ligninolytic enzymes produced by
Penicillium crustosum ,Fusarium nygamai ,Trichoderma capillare , andAspergillus calidoustus . Data were expressed as mean ± standard deviation.Fungi Fermentation mode Prot TC EG BG LiP MnP Lac P. crustosum SSF 552.9 ± 16.8 5.2 ± 0.3 7.2 ± 0.4 1.5 ± 0.6 ND ND 0.9 ± 0.1 SmF 398 ± 0.1 3.9 ± 0.2 5.3 3.6 ± 0.8 ND ND ND SF 743.2 ± 12.7 10.9 ± 1.2 9 ± 0.1 2 ± 0.8 ND ND 0.5 ± 0.1 F. nygamai SSF 709.4 ± 0.9 0.4 0.7 ± 0.1 ND ND ND 9 ± 0.1 SmF 199.8 ± 0.2 0.3 0.7 ± 0.2 ND ND ND 0.9 SF 609.4 ± 0.9 0.6 0.9 ± 0.1 ND ND ND 6.8 ± 1.5 T. capillare SSF 194.8 ± 2.3 ND ND ND ND ND 5.1 ± 0.2 SmF 63 ± 0.1 ND ND ND ND ND ND SF 827 ± 4.2 0.7 0.8 ND ND ND 7.6 ± 0.7 A. calidoustus SSF 498 5 8 ± 1.4 ND ND ND 2 ± 0.1 SmF 209.4 ± 0.2 6 3 ± 0.1 ND ND ND ND SF 1009.1 8 11.5 ± 0.8 ND ND ND 0.7 ± 0.1 Fungus sig *** *** *** *** --- --- *** Fermentation mode sig *** *** *** * --- --- *** Interaction Fungus-Fermentation sig *** *** *** * --- --- *** Prot: Proteins. TC: Total cellulase activity. EG: Endoglucanase activity. BG: β-Glucosidase activity. LiP: Lignin Peroxidase activity. MnP: Manganese-dependant Peroxidase activity. Lac: Laccase activity. SSF: Solid-State Fermentation. SmF: Submerged Fermentation. SF: Sequential Fermentation. ND: Not detected. Significance levels: *
p < 0.05; **p < 0.01; ***p < 0.001; n.s =p > 0.05.
The findings collectively underscore the diversity of enzymatic capabilities among the four strains and highlight the importance of this fungal collection for specific biotechnological applications. Thus, in addition to the fermentation method used, the use of olive stones played a considerable role in enzyme induction, thanks to their LC-rich composition. The ability of
Results between qualitative and quantitative assays can reveal significant differences, as the production of enzymatic activity is strictly linked to the culture conditions involved. Some of these include the composition of the culture medium, the carbon source used, the concentration of inoculum employed, the fermentation system applied, etc. As a result, agar plate screening can give a strong indication of the presence or absence of enzyme activity, and correlates favorably with the quantitative assay. However, the latter may need to be optimized to achieve better enzyme production, especially as the use of recalcitrant biomass represents a barrier to the accessibility of cellulolytic enzymes due to the presence of lignin [47, 55].
In this study, fermentation systems were operated under standard conditions as described previously. However, other factors are reported in the literature to influence the microorganisms' metabolism. In this sense, further studies can be carried out to investigate their effects on the production of the enzymes targeted in this work, such as agitation and light. Agitation represents the most crucial parameter in aerobic fermenters. On the one hand, it provides uniform temperature and gas conditions, and on the other, it enables better mass and heat transfer and facilitates uniform water addition, thus compensating for water lost through evaporation [66]. In terms of light, it plays an important role in various physiological regulatory mechanisms in fungi. It influences numerous signaling pathways [67]. Particularly for
Comparison between Fermentation Methods
The choice of fermentation method is significant because it affects both enzyme production and process efficiency. The culture method plays a crucial role in providing conditions for the adaptation and growth of microorganisms, making various fermentation techniques an attractive method for plant cell wall conversion. Compared to other approaches, the enzymatic arsenal secreted during the fermentation process is the most effective, thanks to the synergistic action of the enzymes, as each targets the product of the other [69].
In general, the results demonstrated (
It is important to note that the substrate composition should be carefully considered based on the specific enzyme to be produced, as it may contain substances that act as inducers. For instance, the utilization of residues that are abundant in lignin favored the production of lignin peroxidase [76]. On the other hand, employing wastes that are rich in cellulose stimulated laccase production [66, 77]. The findings show that enzyme production for any given cultivation method is critically dependent on the specific microorganism and substrate used.
Comparing different fermentation modes can deliver a valuable understanding of the efficiency and performance of different fungi and substrates. It allows the selection of the most productive technique for target enzyme production. Nevertheless, optimization steps are crucial to achieve maximum yields and provide recommendations for the scale-up of fungal-based LC bioprocesses.
Conclusion
The use of LC biomass for the production of biofuels and other valuable products offers huge potential for significantly reducing the carbon footprint of present and projected energy needs. Enzymatic processing provides the benefit of being both exceptionally specific and cost-effective. Nevertheless, the cost of lignocellulose-degrading enzymes remains a major bottleneck to the development of efficient production methods. The efficiency of this process relies on key factors, mainly enzyme-producing microorganisms, the appropriate fermentation system, and the ideal substrate used. The results of the current study show that at
Acknowledgments
The Institutional University Cooperation (IUC) program between Moulay Ismail University and Belgian Flemish Universities, funded by the VLIR-UOS (Vlaamse Interuniversitaire Raad-Universitaire Ontwikkelingssamenwerking) is acknowledged for its financial support. OLEA FOOD Company is also acknowledged for supplementing the olive stones used for this study.
Author Contributions
SA: Conceptualization. Data curation. Formal analysis. Investigation. Methodology. Visualization. Writing -original draft. Writing - review & editing. HN-M: Data curation. Formal analysis. Investigation. Methodology. Visualization. Writing - original draft. Writing - review & editing. BB: Formal analysis. Data curation. Methodology. Visualization. Writing - review & editing. MB-A: Data curation. Writing - review & editing. MD: Data curation. Methodology. Visualization. Writing - review & editing. GH: Funding acquisition. Investigation. Project administration. Resources. Validation. Writing - review & editing. HH: Conceptualization. Funding acquisition. Investigation. Project administration. Resources. Validation. Writing - review & editing.
Conflict of Interest
The authors have no financial conflicts of interest to declare.
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Related articles in JMB
Article
Research article
J. Microbiol. Biotechnol. 2024; 34(5): 1017-1028
Published online May 28, 2024 https://doi.org/10.4014/jmb.2312.12048
Copyright © The Korean Society for Microbiology and Biotechnology.
Lignocellulolytic Enzymes Production by Four Wild Filamentous Fungi for Olive Stones Valorization: Comparing Three Fermentation Regimens
Soukaina Arif1,2, Hasna Nait M’Barek2,3, Boris Bekaert4, Mohamed Ben Aziz5, Mohammed Diouri1,2, Geert Haesaert4, and Hassan Hajjaj1,2*
1Moulay Ismail University of Meknès, Laboratory of Biotechnology and Bioresources Valorization, BP 11201, Zitoune Meknes City, Morocco
2Moulay Ismail University of Meknès, Cluster of Competency «Agri-food, Safety and Security» IUC VLIR-UOS, Marjane 2, BP 298, Meknes City, Morocco
3Paris-Saclay University, CentraleSupélec, European Center of Biotechnology and Bioeconomy (CEBB) - LGPM, 3 rue des Rouges Terres, 51110 Pomacle, France
4Ghent University, Faculty of Bioscience Engineering, Department of Plants and Crops, Valentin Vaerwyckweg 1, Schoonmeersen - gebouw C 9000 Ghent, Belgium
5Sultan Moulay Sliman University, Higher School of Technology, Laboratory of Biotechnology, Bioresources, and Bioinformatics (3BIO), 54000 Khenifra, Morocco
Correspondence to:Soukaina Arif, s.arif@edu.umi.ac.ma
Abstract
Lignocellulolytic enzymes play a crucial role in efficiently converting lignocellulose into valuable platform molecules in various industries. However, they are limited by their production yields, costs, and stability. Consequently, their production by producers adapted to local environments and the choice of low-cost raw materials can address these limitations. Due to the large amounts of olive stones (OS) generated in Morocco which are still undervalued, Penicillium crustosum, Fusarium nygamai, Trichoderma capillare, and Aspergillus calidoustus, are cultivated under different fermentation techniques using this by-product as a local lignocellulosic substrate. Based on a multilevel factorial design, their potential to produce lignocellulolytic enzymes during 15 days of dark incubation was evaluated. The results revealed that P. crustosum expressed a maximum total cellulase activity of 10.9 IU/ml under sequential fermentation (SF) and 3.6 IU/ml of β-glucosidase activity under submerged fermentation (SmF). F. nygamai recorded the best laccase activity of 9 IU/ml under solid-state fermentation (SSF). Unlike T. capillare, SF was the inducive culture for the former activity with 7.6 IU/ml. A. calidoustus produced, respectively, 1,009 μg/ml of proteins and 11.5 IU/ml of endoglucanase activity as the best results achieved. Optimum cellulase production took place after the 5th day under SF, while ligninases occurred between the 9th and the 11th days under SSF. This study reports for the first time the lignocellulolytic activities of F. nygamai and A. calidoustus. Furthermore, it underlines the potential of the four fungi as biomass decomposers for environmentally-friendly applications, emphasizing the efficiency of OS as an inducing substrate for enzyme production.
Keywords: Lignocellulolytic enzymes, filamentous fungi, sequential solid-state and submerged fermentation, olive stones, biorefinery
Introduction
Worldwide, olive oil production has increased threefold in the previous 60 years, reaching 3,098,500 tons in the 2021/22 crop year, as estimated by the International Olive Council [1]. This sector generates an enormous quantity of by-products with a noticeable environmental footprint and applications with less added value each year. Representing about ten percent of the weight of the olive fruit, the olive stones (OS) are the solid residue of the olive oil extraction process. They are obtained in the form of small, crushed fragments after the separation of the remaining pulp and a secondary extraction of the residual oil [2, 3]. The primary application of this biomass is in the generation of electric power or heat through combustion. Recently, it has drawn the attention of researchers because of its valuable composition rich in lignocellulose (LC), namely, cellulose, hemicellulose, and lignin [4], phenols, fats, proteins, and free sugars [5]. After processing, this by-product, also called olive pits or kernels, can serve as a bioenergy feedstock [6], animal feed [7], and nutritional supplement [8], in the cosmetic and pharmaceutical industries [9, 10]. It can also be employed as a precursor to produce activated carbon to be used as an adsorbent [11].
In the biorefinery concept, OS are recognized as a type of LC biomass with significant potential for the production of fuels and bio-chemicals, thus being a promising raw material [12, 13]. Green and safe processes such as enzymatic techniques are used to ensure the efficient exploitation of this valuable biomass. Enzymatic lignocellulose decomposition, a process that consists of converting LC into oligomeric and monomeric units, the substrate complexity requires the use of specialized enzymes [14]. These enzymes are mainly composed of cellulases, hemicellulases, ligninases, and auxiliary enzymes responsible for the degradation of the plant cell wall constituents [15]. So far, many lignocellulolytic enzymes produced by microorganisms, have been identified and clustered into various families in the Carbohydrate-Active EnZyme database (CAZyme), taking their sequence and structural-functional characteristics as a basis for their classification [16].
In the natural environment, fungi stand out among microorganisms due to their remarkable proficiency in degrading LC. This proficiency stems from their capacity to release a wide array of hydrolytic and oxidative extracellular enzymes, which are designed to selectively target the distinct constituents of plant cell walls [17]. Three fungal groups responsible for lignocellulose depolymerization have been described: white‐rot, brown‐rot, and soft‐rot fungi [18]. The cellulose degradation process is performed by glycoside hydrolase (GH) enzymes that possess synergistic catalytic activity. Cellulases are classified into three prevalent groups: endoglucanases (EG)(endo-1-4-β-glucanase; EC 3.2.1.4), exoglucanases (EC 3.2.1.91) and β-glucosidases (EC 3.2.1.21) in charge of β-1,4-glycosidic linkage hydrolysis between glucose units within the cellulose fiber [19]. Hemicellulose hydrolysis requires essentially endo‐1,4‐β‐xylanases (EC 3.2.1.8) for the generation of oligosaccharides, and exo‐1,4‐β‐xylosidase (EC 3.2.1.37) that release xylose by cleavage of oligosaccharides [18]. In terms of lignin consumption, the main groups of ligninolytic enzymes involved include laccases (EC 1.10.3.2; CAZy AA1), manganese-dependent peroxidases (EC 1.11.1.13; CAZy AA2), lignin peroxidases (EC 1.11.1.14; CAZy AA2) and versatile peroxidases (EC 1.11.1.16; CAZy AA2) [20]. Generally, the lignin degradation process is accomplished by white‐rot fungi as secondary metabolism, or due to the limited disposal of carbon, nitrogen, or sulfur [21]. Nowadays, lignocellulolytic enzymes are largely used in the food industry for various applications, such as product texturizing and flavoring, particularly during the processing of fruits and vegetables [22]. Additional areas of interest include biorefinery, textiles, animal feed, and many other sectors [23].
The fermentation process is among the main conditions that influence microbial growth, enzymatic expression, and productivity [24, 25]. Many fermentation regimens have been described representing both benefits and barriers. Solid-state (SSF) and submerged fermentations (SmF) are the common conventional processes widely employed for lignocellulolytic enzyme production. The first one offers remarkable strengths regarding the suitability of LC biomass as a substrate under growth requirements closely reflecting the natural environment in which fungi are adapted. This positive alignment leads to better microbe/ substrate interaction reflected by greater enzyme titers. Nevertheless, the SSF presents complexities in terms of control in scaling-up processes [26, 27]. In comparison, SmF shows great promise. The presence of established methods for monitoring and controlling bioreactors makes it the favored approach for industrial enzyme production. Despite yielding more diluted products, the outcome of the SmF process can be directly utilized as enzyme cocktails by various industries [28, 29]. Based on the limitations of these two methods, sequential fermentation (SF), also called sequential solid-state and submerged fermentation, has been developed as an economical and successful approach. This approach involves using LC as an induction substrate for pre-culture preparation, which is achieved by an SSF step followed by a switch to SmF. Combining the advantages of the two techniques, the process promotes greater enzyme production and improves both substrate assimilation and fungal growth morphology [30-32].
In Morocco, according to official reports from the Ministry of Agriculture, the olive tree dominates the culture of fruit species, accounting for 65% of the national tree area [40]. The olive oil sector is a flagship field in the Fez Meknes region, one of the two regions in the kingdom where 54% of the olive oil area is concentrated. Olive oil processing generates a significant quantity of by-products, such as OS, which represent an impressive source of bioconstituents. Previous research [41] revealed that this by-product collected from our study region, exhibited a significant oxygen content of approximately 35.66 ± 0.71%, indicating its recalcitrant nature. Besides, OS have attracted researchers’ interest due to their valuable composition rich in LC materials, including cellulose (27.1-36.4%), hemicellulose (24.5-32.2%), and lignin (26.0-40.4%) [42], making them promising sources for enzyme production.
This study aims to explore the potential of local biomass and wild fungal species in green bioprocesses that require further attention and consideration at the national level.
Materials and Methods
Culture Media and Chemicals
All chemicals used in this study were supplied by Sigma Aldrich or Thermo Fisher Scientific (ACS grade, France). The high-purity enzyme substrates (≥ 95%) employed in enzymatic assays include 1st grade Whatman filter paper (WHA1001150), carboxymethyl cellulose (CMC; 419311-100G), cellobiose (C7252-25G), 2,2-azino-bis (3-ethylbenzothiazoline-6-sulfonic acid) (ABTS; A1888-5G), veratryl alcohol (VA; D133000-25G) and phenol red (114529-5G).
Commercial Potato Dextrose Agar (PDA) was used for in-plate fungal growth, subculturing, and conservation. For fermentation experiments, an adapted medium from Mendels & Sternberg [44] was used with the following composition: peptone; 0.5%, yeast extract; 0.2%, KH2PO4; 0.2%, (NH4)2SO4; 0.14%, Tween 80; 0.1%, salt solution; 0.1% (FeSO4·7H2O; 5 mg/l, CoCl2; 2 mg/l, MnSO4·H2O; 1.6 mg/l, ZnSO4·7H2O; 1.4 mg/l), CaCl2; 0.03%, urea; 0.03%, and MgSO4·7H2O; 0.02%, pH 5.5.
Fungal Strains
In our previous work [43], wild filamentous fungi were isolated from niche substrates in the Fez-Meknes region, and their lignocellulolytic potential was profiled. Four strains were selected for this study, namely:
Olive Stones Biomass
Olive stones (OS) were sampled directly from OLEA FOOD Company, the largest olive oil producer in the Fez Meknes region, which uses the two-phase extraction system. OS were collected in sterile bags, air-dried, ground using a Romer Analytical Sampling Mill (RAS, Romer Labs, Austria), sieved into a homogenous substrate using standard test sieves (≤ 500 μm, Retsch, France), and stored at 4°C until use in fermentations.
Fermentation Systems
A one-week-old culture of each fungus was used to prepare the inoculum. 10 ml of sterile distilled water with 0.01% Tween 80 was poured into the Petri dish to prepare a rich spore suspension. The inoculum solution was recovered, and its concentration was adjusted to 107 spores/ml using a Neubauer counting chamber. Each flask was supplemented with 107 spores of each fungal species separately. OS were used as the sole carbon source, and a substrate load of 5 g per flask was selected for all fermentations. Three fermentation systems were tried in our study to assess their effect on the production of lignocellulolytic enzymes by selected fungi. Namely, Solid-State Fermentation (SSF), Submerged Fermentation (SmF), and Sequential Fermentation (SF) were used. All flasks were incubated at 28°C for two weeks in complete darkness and static mode. All fermentations were conducted in duplicate.
Solid-State Fermentation (SSF) Each flask was supplemented with 5 g of OS as stated before. Moisture was adjusted to 75% by adding the liquid medium of Mendels & Sternberg. After sterilization and cooling, 107 spores of the four strains were added aseptically and separately. Every 48 h, proteins and extracellular enzymes were extracted by adding 50 ml of distilled water to the solid medium, shaking at 180 rpm for 1h at room temperature, filtering using Whatman No. 1 filter paper, and then centrifuging at 10,000 ×
Submerged Fermentation (SmF) Two hundred fifty milliliters (250 ml) flasks with a liquid working volume of 100 ml were prepared, where OS biomass was the sole carbon source. As for other fermentation systems, 107 spores of each fungus were separately inoculated, and the flasks were incubated in static mode for two weeks. At every sampling point, the liquid broth was recovered, filtered, and centrifuged using the same conditions as above. The supernatant was used for proteins and enzyme activities’ quantification according to standard protocols described in Section 2.5.
Sequential Fermentation (SF) Sequential fermentation consisted of two stages. The first was a SSF pre-culture period lasting for 2 days and conducted as described above. Afterward, a transition to SmF was done by aseptically adding 100 ml of sterile liquid medium. Growth conditions were kept the same as for other fermentation systems, and the supernatant was similarly prepared and used for analytical purposes.
Analytical Methods
Olive stones’ characterization The olive stones’ biomass was characterized for its composition and physicochemical properties. Moisture content was measured using a moisture analyzer (MD series, Japan). The insoluble ash content was determined with the traditional method, and the fiber content was quantified as three consecutive fractions using the standard protocols of Van Soest
Hemicellulose = NDF – ADF (1)
Cellulose = ADF – ADL (2)
Lignin = ADL – Insoluble Ash (3)
Evaluating the enzymatic potential of fungi
Lignocellulolytic index
As described by Pointing [46], an in-plate colorimetric method was used to assess endoglucanases (EG), lignin peroxidases, and manganese-dependent peroxidases (LiP and MnP), and laccase (Lac) enzymes’ production, respectively. Briefly, fungi were first grown on a solid medium containing the specific enzyme substrate at appropriate concentrations: 2% CMC for EG, 0.01% Azure B for LiP and MnP, and 0.1% ABTS for Lac. The cultures were monitored over 10 days, and positive enzyme production results were visualized as a yellow to dark orange halo zone around the colony for the EG (after staining with congo red and destaining with 1 M NaCl), a clearing zone for LiP & MnP, and a green coloration formation for Lac. Activity level was determined using the Enzyme Index (EI), calculated by dividing the halo diameter by the colony diameter [47]. Trials were performed twice to ensure accuracy.
Cellulolytic activities
Cellulolytic activities were assessed in three primary components as described by Ghose [48]: total cellulase activity using the Filter Paper Assay (FPA), endoglucanase activity using CMC as a substrate, and β-glucosidase activity using cellobiose. Briefly, enzyme extracts were buffered in 50 mM Na-citrate (pH 4.8) and supplemented with the specific substrate for each enzyme activity: strips (1 × 6 cm) of 1st grade Whatman filter paper, 2% CMC and 50 mM cellobiose for FPA, EG and BG activities, respectively. The reaction tubes were incubated at 50°C for 1 h (FPA) or 30 min (EG and BG), supplemented with 3 ml of modified dinitrosalicylic acid (DNS) reagent [49], incubated at 100°C for 15 min to stop the enzymatic reaction and enable color formation, and then cooled in an ice bath. Reducing sugars liberated during saccharification react under heat with DNS to form a yellow to dark orange color. Hence, they were quantified as D-glucose equivalent at 540 nm, and enzyme activities were calculated. One IU/ml is defined as the amount of enzyme capable of catalyzing the conversion of 1 μmol of substrate per minute under reaction conditions.
Ligninolytic activities
According to Hariharan and Nambisan [50], ligninolytic enzymes were measured as Lac, LiP, and MnP activities using the colorimetric method. Lac activity was monitored by following the oxidation kinetics of ABTS over time at 436 nm. Enzyme supernatant (0.6 ml) was buffered in 0.3 ml Na-citrate pH 4.5, and 0.1 ml of 0.3 mM ABTS was added to start the reaction. For LiP activity, enzyme extract was buffered in 0.1 M of Na-citrate pH 3, and 1 mM of VA was added as the enzyme substrate. The reaction was initiated by H2O2, and the change in absorbance was monitored at 310 nm. Finally, MnP activity was measured at 610 nm by mixing enzyme extract, 0.1 M Na-citrate buffer pH 5, 250 mM Na-lactate, 2 mM manganese sulfate, 0.5 % bovine serum albumin, 0.2 mM H2O2, and 0.1% phenol red as the substrate. The enzymatic activities were calculated from the generated curves and expressed in IU/ml, as defined earlier.
Proteins quantification Proteins were quantified to investigate the correlation between their concentration and enzyme activity, which may provide information on the dynamics of enzyme production and secretion, allowing for the assessment of enzyme performance independently of total protein concentration by determining the specific activity targeted in our perspective work. The assay was performed using the Lowry at a wavelength of 750 nm. Bovine serum albumin was used for the standard curve, with concentrations ranging from 0 to 100 μg/ml [51].
Experimental Methodology and Statistical Analysis of Data
A mixed-level full factorial design was conducted to assess the effect of the fungal strain and fermentation system on the expression of proteins, cellulolytic, and ligninolytic enzymes. Data were collected over time and expressed as mean ± standard deviation. ANOVA was used to test the different factors and their interactions. The relationships between quantitative variables were evaluated by the correlation method using the open-source R software [52]. Differences with a
Results and Discussion
Chemical Composition of the Olive Stones
The growth of fungi and their enzyme production is influenced by substrate complexity and composition, which can either enhance or inhibit enzyme activities [53]. Therefore, a chemical analysis was carried out to characterize the substrate selected for this work. Table 1 shows that OS exhibited a low moisture content. The residues were obtained from an olive oil production company that utilizes a two-phase system for processing. After being separated from the olive pulp and the extracted residual oil, the by-product undergoes a drying process. The reduced moisture content is beneficial for long-term preservation, as it minimizes microbial damage [54]. Additionally, the ash content found in the residues can provide a favorable environment for fungal growth.
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Table 1 . Chemical characterization of Moroccan olive stones. Data were expressed as mean ± standard deviation..
Component Content (%) Hemicellulose 27.2 ± 0.6 Cellulose 32.1 ± 0.6 Lignin 24.1 ± 1.6 Ash 2.8 ± 0.3 Moisture 10.1 ± 0.1
With a cellulose content of 32.10%, the LC waste of this study demonstrates a considerable ability to stimulate cellulase activity. The presence of lignin, accounting for 24.07%, is linked to cellulose hydrolysis accessibility. Nait Mbarek
Pretreatments can be applied to improve substrate amorphism and porosity by removing these structural compounds or reducing their recalcitrance [55]. The composition of the LC waste used in this study can be deemed suitable for diverse applications, capitalizing on both bioactive constituents and LC content. Additionally, this biomass is cost-effective, and its collection contributes to waste management, rendering it a feasible and sustainable alternative.
Kinetics of Lignocellulolytic Cocktail Production
Considering the diversity in growth rates and enzyme secretion patterns displayed by the fungal strains, the fermentation period emerged as a crucial element that considerably influenced the synthesis of lignocellulolytic enzymes. The systematic monitoring of enzyme activity over time was used to determine the optimum incubation period for each strain cultivated under the different culture methods.
According to the statistical evaluations, the incubation period had a statistically significant impact on the expression of enzymatic activities (
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Figure 1. Kinetics of the cellulolytic and ligninolytic enzymes production under three fermentation modes.
Penicillium crustosum ,Fusarium nygamai ,Trichoderma capillare , andAspergillus calidoustus were cultivated during 15 days of dark incubation without agitation, and olive stones were used as substrate. Experiments were carried out in constant temperature (28°C), inoculum size (107 spores), moisture content (75%), and pH (5.5) conditions.
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Figure 2. Correlation matrix between quantitative variables at a confidence interval of 95%.
The correlation coefficient is statistically significant if the
p -value is < 0.05. Quantitative variables refer to Proteins, TC: Total cellulase activity. EG: Endoglucanase activity, BG: β-Glucosidase activity, LiP: Lignin Peroxidase activity, MnP: Manganese-dependant Peroxidase activity and Lac: Laccase activity.
-
Figure 3. Protein concentration from crude enzyme cocktails produced by
Penicillium crustosum ,Fusarium nygamai ,Trichoderma capillare , andAspergillus calidoustus using olive stones as substrate during 15 days of dark incubation. SSF, SmF, and SF refer to solid-state fermentation, submerged fermentation, and sequential fermentation, respectively.
The results are consistent with the study conducted by Salgado
Altogether, our research results underline the need to understand strain-specific differences and the influence of incubation time. They can contribute to a better comprehension of the dynamics of lignocellulolytic enzyme production, which is essential for optimizing industrial processes and biotechnological applications involving the degradation of LC biomass.
Characteristics and Enzymatic Profile of the Fungal Strains
The choice of fungus can greatly impact the overall efficiency of lignocellulose conversion. For this reason, researchers often explore the diversity of microbial strains to identify potent lignocellulolytic enzymes producers. In our study, the four fungal strains, including
-
Table 2 . Enzymatic Index of four wild filamentous fungi isolated from Morocco..
Fungi Enzymatic Index (EI) EG LiP & MnP Lac Penicillium crustosum 2.4 ND 2 Fusarium nygamai 2 ND 3.3 Trichoderma capillare ND ND 2.8 Aspergillus calidoustus 2.9 ND 2.2 ND: Not detected..
-
Table 3 . Effect of strain and fermentation mode on the optimum production of cellulolytic and ligninolytic enzymes produced by
Penicillium crustosum ,Fusarium nygamai ,Trichoderma capillare , andAspergillus calidoustus . Data were expressed as mean ± standard deviation..Fungi Fermentation mode Prot TC EG BG LiP MnP Lac P. crustosum SSF 552.9 ± 16.8 5.2 ± 0.3 7.2 ± 0.4 1.5 ± 0.6 ND ND 0.9 ± 0.1 SmF 398 ± 0.1 3.9 ± 0.2 5.3 3.6 ± 0.8 ND ND ND SF 743.2 ± 12.7 10.9 ± 1.2 9 ± 0.1 2 ± 0.8 ND ND 0.5 ± 0.1 F. nygamai SSF 709.4 ± 0.9 0.4 0.7 ± 0.1 ND ND ND 9 ± 0.1 SmF 199.8 ± 0.2 0.3 0.7 ± 0.2 ND ND ND 0.9 SF 609.4 ± 0.9 0.6 0.9 ± 0.1 ND ND ND 6.8 ± 1.5 T. capillare SSF 194.8 ± 2.3 ND ND ND ND ND 5.1 ± 0.2 SmF 63 ± 0.1 ND ND ND ND ND ND SF 827 ± 4.2 0.7 0.8 ND ND ND 7.6 ± 0.7 A. calidoustus SSF 498 5 8 ± 1.4 ND ND ND 2 ± 0.1 SmF 209.4 ± 0.2 6 3 ± 0.1 ND ND ND ND SF 1009.1 8 11.5 ± 0.8 ND ND ND 0.7 ± 0.1 Fungus sig *** *** *** *** --- --- *** Fermentation mode sig *** *** *** * --- --- *** Interaction Fungus-Fermentation sig *** *** *** * --- --- *** Prot: Proteins. TC: Total cellulase activity. EG: Endoglucanase activity. BG: β-Glucosidase activity. LiP: Lignin Peroxidase activity. MnP: Manganese-dependant Peroxidase activity. Lac: Laccase activity. SSF: Solid-State Fermentation. SmF: Submerged Fermentation. SF: Sequential Fermentation. ND: Not detected. Significance levels: *
p < 0.05; **p < 0.01; ***p < 0.001; n.s =p > 0.05..
The findings collectively underscore the diversity of enzymatic capabilities among the four strains and highlight the importance of this fungal collection for specific biotechnological applications. Thus, in addition to the fermentation method used, the use of olive stones played a considerable role in enzyme induction, thanks to their LC-rich composition. The ability of
Results between qualitative and quantitative assays can reveal significant differences, as the production of enzymatic activity is strictly linked to the culture conditions involved. Some of these include the composition of the culture medium, the carbon source used, the concentration of inoculum employed, the fermentation system applied, etc. As a result, agar plate screening can give a strong indication of the presence or absence of enzyme activity, and correlates favorably with the quantitative assay. However, the latter may need to be optimized to achieve better enzyme production, especially as the use of recalcitrant biomass represents a barrier to the accessibility of cellulolytic enzymes due to the presence of lignin [47, 55].
In this study, fermentation systems were operated under standard conditions as described previously. However, other factors are reported in the literature to influence the microorganisms' metabolism. In this sense, further studies can be carried out to investigate their effects on the production of the enzymes targeted in this work, such as agitation and light. Agitation represents the most crucial parameter in aerobic fermenters. On the one hand, it provides uniform temperature and gas conditions, and on the other, it enables better mass and heat transfer and facilitates uniform water addition, thus compensating for water lost through evaporation [66]. In terms of light, it plays an important role in various physiological regulatory mechanisms in fungi. It influences numerous signaling pathways [67]. Particularly for
Comparison between Fermentation Methods
The choice of fermentation method is significant because it affects both enzyme production and process efficiency. The culture method plays a crucial role in providing conditions for the adaptation and growth of microorganisms, making various fermentation techniques an attractive method for plant cell wall conversion. Compared to other approaches, the enzymatic arsenal secreted during the fermentation process is the most effective, thanks to the synergistic action of the enzymes, as each targets the product of the other [69].
In general, the results demonstrated (
It is important to note that the substrate composition should be carefully considered based on the specific enzyme to be produced, as it may contain substances that act as inducers. For instance, the utilization of residues that are abundant in lignin favored the production of lignin peroxidase [76]. On the other hand, employing wastes that are rich in cellulose stimulated laccase production [66, 77]. The findings show that enzyme production for any given cultivation method is critically dependent on the specific microorganism and substrate used.
Comparing different fermentation modes can deliver a valuable understanding of the efficiency and performance of different fungi and substrates. It allows the selection of the most productive technique for target enzyme production. Nevertheless, optimization steps are crucial to achieve maximum yields and provide recommendations for the scale-up of fungal-based LC bioprocesses.
Conclusion
The use of LC biomass for the production of biofuels and other valuable products offers huge potential for significantly reducing the carbon footprint of present and projected energy needs. Enzymatic processing provides the benefit of being both exceptionally specific and cost-effective. Nevertheless, the cost of lignocellulose-degrading enzymes remains a major bottleneck to the development of efficient production methods. The efficiency of this process relies on key factors, mainly enzyme-producing microorganisms, the appropriate fermentation system, and the ideal substrate used. The results of the current study show that at
Acknowledgments
The Institutional University Cooperation (IUC) program between Moulay Ismail University and Belgian Flemish Universities, funded by the VLIR-UOS (Vlaamse Interuniversitaire Raad-Universitaire Ontwikkelingssamenwerking) is acknowledged for its financial support. OLEA FOOD Company is also acknowledged for supplementing the olive stones used for this study.
Author Contributions
SA: Conceptualization. Data curation. Formal analysis. Investigation. Methodology. Visualization. Writing -original draft. Writing - review & editing. HN-M: Data curation. Formal analysis. Investigation. Methodology. Visualization. Writing - original draft. Writing - review & editing. BB: Formal analysis. Data curation. Methodology. Visualization. Writing - review & editing. MB-A: Data curation. Writing - review & editing. MD: Data curation. Methodology. Visualization. Writing - review & editing. GH: Funding acquisition. Investigation. Project administration. Resources. Validation. Writing - review & editing. HH: Conceptualization. Funding acquisition. Investigation. Project administration. Resources. Validation. Writing - review & editing.
Conflict of Interest
The authors have no financial conflicts of interest to declare.
Fig 1.
Fig 2.
Fig 3.
-
Table 1 . Chemical characterization of Moroccan olive stones. Data were expressed as mean ± standard deviation..
Component Content (%) Hemicellulose 27.2 ± 0.6 Cellulose 32.1 ± 0.6 Lignin 24.1 ± 1.6 Ash 2.8 ± 0.3 Moisture 10.1 ± 0.1
-
Table 2 . Enzymatic Index of four wild filamentous fungi isolated from Morocco..
Fungi Enzymatic Index (EI) EG LiP & MnP Lac Penicillium crustosum 2.4 ND 2 Fusarium nygamai 2 ND 3.3 Trichoderma capillare ND ND 2.8 Aspergillus calidoustus 2.9 ND 2.2 ND: Not detected..
-
Table 3 . Effect of strain and fermentation mode on the optimum production of cellulolytic and ligninolytic enzymes produced by
Penicillium crustosum ,Fusarium nygamai ,Trichoderma capillare , andAspergillus calidoustus . Data were expressed as mean ± standard deviation..Fungi Fermentation mode Prot TC EG BG LiP MnP Lac P. crustosum SSF 552.9 ± 16.8 5.2 ± 0.3 7.2 ± 0.4 1.5 ± 0.6 ND ND 0.9 ± 0.1 SmF 398 ± 0.1 3.9 ± 0.2 5.3 3.6 ± 0.8 ND ND ND SF 743.2 ± 12.7 10.9 ± 1.2 9 ± 0.1 2 ± 0.8 ND ND 0.5 ± 0.1 F. nygamai SSF 709.4 ± 0.9 0.4 0.7 ± 0.1 ND ND ND 9 ± 0.1 SmF 199.8 ± 0.2 0.3 0.7 ± 0.2 ND ND ND 0.9 SF 609.4 ± 0.9 0.6 0.9 ± 0.1 ND ND ND 6.8 ± 1.5 T. capillare SSF 194.8 ± 2.3 ND ND ND ND ND 5.1 ± 0.2 SmF 63 ± 0.1 ND ND ND ND ND ND SF 827 ± 4.2 0.7 0.8 ND ND ND 7.6 ± 0.7 A. calidoustus SSF 498 5 8 ± 1.4 ND ND ND 2 ± 0.1 SmF 209.4 ± 0.2 6 3 ± 0.1 ND ND ND ND SF 1009.1 8 11.5 ± 0.8 ND ND ND 0.7 ± 0.1 Fungus sig *** *** *** *** --- --- *** Fermentation mode sig *** *** *** * --- --- *** Interaction Fungus-Fermentation sig *** *** *** * --- --- *** Prot: Proteins. TC: Total cellulase activity. EG: Endoglucanase activity. BG: β-Glucosidase activity. LiP: Lignin Peroxidase activity. MnP: Manganese-dependant Peroxidase activity. Lac: Laccase activity. SSF: Solid-State Fermentation. SmF: Submerged Fermentation. SF: Sequential Fermentation. ND: Not detected. Significance levels: *
p < 0.05; **p < 0.01; ***p < 0.001; n.s =p > 0.05..
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