JMB

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Table. 2.

Table. 2.

Pyrosequencing results and statistical analysis of the soil fungal community related to T. matsutake.

G-F1-1 G-F1-2 G-F2-1 G-F2-2 G-W-1 G-W-2 G-S-1 G-S-2 Y-F1-1 Y-F1-2
Number of Valid reads 101347 94695 92141 106048 56395 57412 94346 102565 89952 86224
OTUsa 347 203 578 211 554 230 439 469 664 124
Chao1b 348.68 204.38 596.83 217.52 561.17 238.12 447.52 475.43 665.60 124.58
Shannonc 2.90 2.05 3.69 0.97 3.54 1.25 2.61 2.65 4.01 1.70
Simpsond 0.11 0.30 0.06 0.64 0.08 0.58 0.19 0.28 0.04 0.29
Goods lib. Coveragee(%) 99.98 99.99 99.92 99.98 99.92 99.94 99.96 99.96 99.98 99.99

aOTUs: Operational Taxonomic Units

bChao1: Chao1 estimation for species richness

cShannon: Shannon index for species diversity, > 0, higher, more diverse

dSimpson: Simpson index for species diversity, 0 ~ 1, 1 = the simplest

eGoods Lib. Coverage: [1 - (number of singleton OTUs / number of total reads)] × 100

J. Microbiol. Biotechnol. 2021;31:686~695 https://doi.org/10.4014/jmb.2103.03021
© J. Microbiol. Biotechnol.