JMB

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Table. 4.

Table. 4.

Different functions predicted by PICRUSt at COGs

Beef Pork Chicken Milk p value
Cellular processes and signaling 5816471±377999.1b 5697353±259371.6b 6173365±138974.3b 4987345±138344.3a 0.003**
Information storage and processing 5193771±463645.52 5076513±308720.14 5399127±153327.7 4658921±49672.14 0.071
Metabolism 10045582±721585.9b 9875222±487898.8ab 10622152±275996.1b 8710010±170597.4a 0.006**
Poorly characterized 5005496±362545.03ab 4939278±250441.92ab 5225184±168885.03b 4401399±63489.51a 0.016*
[A] RNA processing and modification 4277±179.87a 4019.67±213.86a 5120.33±217.05b 4490.67±503.54ab 0.013*
[B] Chromatin structure and dynamics 3209.67±1025.41b 3501.67±611.56b 3451.67±812.08b 990.67±570.37a 0.011*
[C] Energy production and conversion 1573935±111497.12b 1541481±71427.43b 1698296±33767.46b 1278554±48222.99a 0.001**
[D] Cell cycle control, cell division, chromosome partitioning 282634±24318.56 278584±16812.26 290374.3±8680.4 249449±2200.72 0.051
[E] Amino acid transport and metabolism 2298251±164040.8b 2271382±107055.38b 2419748±62106.42b 1972583±45477.79a 0.005**
[F] Nucleotide transport and metabolism 735090.3±69040.23 721781.7±45682.14 764439±25512.18 703316.3±6263.95 0.421
[G] Carbohydrate transport and metabolism 1880176±172511.83 1802427±115067.09 1942672±49190.07 1807801±9347.56 0.381
[H] Coenzyme transport and metabolism 1090466±95304.73b 1083788±67973.13b 1175842±38472.76b 875439±23775a 0.002**
[I] Lipid transport and metabolism 670796±21024.87b 667287±12323.31b 694460.3±31448.6b 561150±12810.06a <0.001***
[J] Translation, ribosomal structure and biogenesis 1478325±149160.01 1463169±100286.51 1537753±61554.38 1395761±19171.54 0.397
[K] Transcription 2050886±191931.41ab 1993281±128859.08ab 2110586±82127.59b 1732777±27739.02a 0.025*
[L] Replication, recombination and repair 1657073±122212.95ab 1612542±80904.41ab 1742216±20764.12b 1524902±24689.92a 0.042*
[M] Cell wall/membrane/envelope biogenesis 1503120±130001.72ab 1485715±85399.44ab 1627713±38921.33b 1314289±22132.34a 0.010*
[N] Cell motility 657310.7±22538.48ab 630634.7±22261.57ab 705109.3±26530.78b 585546.7±45032.27a 0.008**
[O] Post-translational modification, protein turnover, and chaperones 866454±48445.47b 854311.7±34067.4ab 920225.3±16695.2b 773750±20498.05a 0.004**
[P] Inorganic ion transport and metabolism 1397135±93362.38b 1393335±70483.23b 1509541±46792.47b 1178174±25856.18a 0.002**
[Q] Secondary metabolites biosynthesis, transport, and catabolism 399731±1118.3b 393741±2627.54b 417153.3±19790.56b 332993±13300.19a <0.001***
[R] General function prediction only 2872449±236004.18b 2842871±164029.64ab 2989845±103796.87b 2442005±37582.94a 0.012*
[S] Function unknown 2133048±126610.64ab 2096407±86750.13ab 2235339±65814.12b 1959394±26102.66a 0.024*
[T] Signal transduction mechanisms 1214394.7±114305.34b 1184120.3±75932.46b 1227335.3±68151.53b 886463.7±23094.22a 0.002**
[U] Intracellular trafficking, secretion, and vesicular transport 784593±7130.97a 763960.7±16969.4a 881245.3±17699.9b 757107.3±43086.33a 0.001**
[V] Defense mechanisms 503321.3±81694.33 495820.3±59047.98 516351.3±34766.26 416290.7±9829.84 0.173
[W] Extracellular structures 3748.67±229.1 3508.33±296.56 4196±408.02 4034±373.49 0.134
[Z] Cytoskeleton 894.33±346.15 698±241.95 814.67±358.43 415±239.06 0.299

The data were written as the mean values ± standard deviation (SD).

The p values were calculated using Anova test (*p < 0.05; **p < 0.01; ***p < 0.001).

a,b,cRepresent different superscripts differed significantly (p < 0.05).

The numeric values represented the number of reads.

J. Microbiol. Biotechnol. 2020;30:1321~1334 https://doi.org/10.4014/jmb.2003.03021
© J. Microbiol. Biotechnol.