JMB

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Table. 3.

Table. 3.

Prevalence and proportion of total reads for “species” detected in at least 10% of samples.

Species Prevalence/126(%) % total reads Reads
Lactobacillus sp. 93 (73.8%) 0.3 3,470
Lactobacillus iners 84 (66.7%) 30.9 327,884
Lactobacillus crispatus 82 (65.1%) 33.7 358,089
Lactobacillaceae 80 (63.5%) 0.0 444
Lactobacillus helveticus 46 (36.5%) 0.0 260
Lactobacillus sp. 42 (33.3%) 0.2 2,514
Ureaplasma parvum 38 (30.2%) 1.8 18,741
Atopobium vaginae 36 (28.6%) 3.3 35,148
Lactobacillus psittaci 36 (28.6%) 0.5 5,604
Lactobacillus jensenii 35 (27.8%) 3.6 38,601
Gardnerella vaginalis 31 (24.6%) 0.4 4,761
Prevotella timonensis 31 (24.6%) 0.7 7,661
Dialister micraerophilus 31 (24.6%) 0.5 5,368
Prevotella bivia 28 (22.2%) 1.4 15,402
Prevotella sp. 27 (21.4%) 0.0 344
Lactobacillus vaginalis 26 (20.6%) 0.0 356
Megasphaera sp. 24 (19.0%) 2.0 20,893
Lactobacillus kitasatonis 24 (19.0%) 0.0 85
Lactobacillus ultunensis 23 (18.3%) 0.0 85
Veillonellaceae 22 (17.5%) 0.0 72
Dialister sp. 21 (16.7%) 0.2 2,311
Aerococcus christensenii 21 (16.7%) 0.1 1,053
Prevotellaceae 21 (16.7%) 0.0 154
Atopobium sp. 21 (16.7%) 0.0 72
Megasphaera sp. 20 (15.9%) 0.0 133
Lactobacillus gasseri 18 (14.3%) 2.2 23,384
Peptoniphilus indolicus 18 (14.3%) 0.0 326
Sneathia sanguinegens 17 (13.5%) 0.7 7,535
Coriobacteriaceae 17 (13.5%) 0.2 1,745
Microbacterium laevaniformans group 17 (13.5%) 0.1 705
Leptotrichia amnionii 16 (12.7%) 2.8 29,310
Lactobacillus rodentium 16 (12.7%) 0.0 254
Lactobacillus sp. 16 (12.7%) 0.0 61
Lactobacillales 16 (12.7%) 0.0 20
Streptococcus anginosus 15 (11.9%) 1.1 12,176
Dialister sp. 15 (11.9%) 0.0 48
Gordonia sputi group 14 (11.1%) 0.4 4,004
Lactobacillus sp. 14 (11.1%) 0.1 649
Propionibacterium acnes 14 (11.1%) 0.0 50
Ruminococcaceae 13 (10.3%) 0.2 1,672
Prevotella sp. 13 (10.3%) 0.0 480
Dialister propionicifaciens 13 (10.3%) 0.0 73
The Remainder species 12.7 136,080
J. Microbiol. Biotechnol. 2020;30:248~258 https://doi.org/10.4014/jmb.1908.08016
© J. Microbiol. Biotechnol.