JMB

Cited by CrossRef (72)

  1. Alen Pšeničnik, Roman Reberšek, Lucija Slemc, Tim Godec, Luka Kranjc, Hrvoje Petković. Simple and reliable in situ CRISPR-Cas9 nuclease visualization tool is ensuring efficient editing in Streptomyces species. Journal of Microbiological Methods 2022;200:106545
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  4. Jinyao Zhang, Jie Xu, Huijie Li, Yongyong Zhang, Zheng Ma, Andreas Bechthold, Xiaoping Yu. Enhancement of toyocamycin production through increasing supply of precursor GTP in Streptomyces diastatochromogenes 1628. J Basic Microbiol 2022;62:750
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  5. Namil Lee, Soonkyu Hwang, Jihun Kim, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho. Mini review: Genome mining approaches for the identification of secondary metabolite biosynthetic gene clusters in Streptomyces. Computational and Structural Biotechnology Journal 2020;18:1548
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  7. Xingchen Dong, Siyi Wu, Zihuan Rao, Yaqian Xiao, Yan Long, Zhixiong Xie. Insight into the High-Efficiency Benzo(a)pyrene Degradation Ability of Pseudomonas benzopyrenica BaP3 and Its Application in the Complete Bioremediation of Benzo(a)pyrene. IJMS 2023;24:15323
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  9. Manar Magdy Mahmoud Mohamed, Maria Mahmoud Abboud, Matiss Maleckis, Luciano D. O. Souza, José M. A. Moreira, Charlotte H. Gotfredsen, Tilmann Weber, Ling Ding. Pepticinnamins N, O, and P, Nonribosomal Peptides from the Soil-Derived Streptomyces mirabilis P8-A2. J. Nat. Prod. 2024;87:1075
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  11. Jan Kormanec, Renata Novakova, Dominika Csolleiova, Lubomira Feckova, Bronislava Rezuchova, Beatrica Sevcikova, Dagmar Homerova. The antitumor antibiotic mithramycin: new advanced approaches in modification and production. Appl Microbiol Biotechnol 2020;104:7701
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  12. Joon Young Park, Hemraj Rimal, Ina Bang, Linh Khanh Nong, Donghyuk Kim. Genome-wide Identification of DNA-protein Interaction to Reconstruct Bacterial Transcription Regulatory Network. Biotechnol Bioproc E 2020;25:944
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  14. Rainer Breitling, Martina Avbelj, Oksana Bilyk, Francesco Del Carratore, Alessandro Filisetti, Erik K R Hanko, Marianna Iorio, Rosario Pérez Redondo, Fernando Reyes, Michelle Rudden, Emmanuele Severi, Lucija Slemc, Kamila Schmidt, Dominic R Whittall, Stefano Donadio, Antonio Rodríguez García, Olga Genilloud, Gregor Kosec, Davide De Lucrezia, Hrvoje Petković, Gavin Thomas, Eriko Takano. Synthetic biology approaches to actinomycete strain improvement. 2021;368
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  17. Dainan Mao, Aya Yoshimura, Rurun Wang, Mohammad R. Seyedsayamdost. Reporter‐Guided Transposon Mutant Selection for Activation of Silent Gene Clusters in Burkholderia thailandensis. ChemBioChem 2020;21:1826
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  20. Namil Lee, Soonkyu Hwang, Woori Kim, Yongjae Lee, Ji Hun Kim, Suhyung Cho, Hyun Uk Kim, Yeo Joon Yoon, Min-Kyu Oh, Bernhard O. Palsson, Byung-Kwan Cho. Systems and synthetic biology to elucidate secondary metabolite biosynthetic gene clusters encoded inStreptomycesgenomes. Nat. Prod. Rep. 2021;38:1330
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  21. Jing Shu, Kexin Cao, Chuanjiang Fei, Hui Dai, Yuhang Li, Yi Cao, Tao Zhou, Miao Yu, Zihao Xia, Mengnan An, Yuanhua Wu. Antiviral Mechanisms of Anisomycin Produced by Streptomyces albulus SN40 on Potato Virus Y. J. Agric. Food Chem. 2024;72:3506
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  22. Ignacio Fernández-Pastor, Victor González-Menéndez, Ignacio González, Rachel Serrano, Thomas A. Mackenzie, Guillermo Benítez, Manuel Casares-Porcel, Olga Genilloud, Fernando Reyes. Escuzarmycins A–D, Potent Biofungicides to Control Septoria tritici Blotch. J. Agric. Food Chem. 2024;72:15256
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  24. Namil Lee, Woori Kim, Soonkyu Hwang, Yongjae Lee, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho. Thirty complete Streptomyces genome sequences for mining novel secondary metabolite biosynthetic gene clusters. Sci Data 2020;7
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  25. Hee-Geun Jo, Joshua Julio Adidjaja, Do-Kyung Kim, Bu-Soo Park, Namil Lee, Byung-Kwan Cho, Hyun Uk Kim, Min-Kyu Oh. Comparative genomic analysis of Streptomyces rapamycinicus NRRL 5491 and its mutant overproducing rapamycin. Sci Rep 2022;12
    https://doi.org/10.1038/s41598-022-14199-6
  26. Anne-Sofie De Rop, Jeltien Rombaut, Thomas Willems, Marilyn De Graeve, Lynn Vanhaecke, Paco Hulpiau, Sofie L. De Maeseneire, Maarten L. De Mol, Wim K. Soetaert. Novel Alkaloids from Marine Actinobacteria: Discovery and Characterization. Marine Drugs 2021;20:6
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  27. Xing Li, Xiaojing Hu, Yong Sheng, Hengyu Wang, Meifeng Tao, Yixin Ou, Zixin Deng, Linquan Bai, Qianjin Kang. Adaptive Optimization Boosted the Production of Moenomycin A in the Microbial Chassis Streptomyces albus J1074. ACS Synth. Biol. 2021;10:2210
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  28. Mengyuan Li, Yi-Xin Huo, Shuyuan Guo. CRISPR-Mediated Base Editing: From Precise Point Mutation to Genome-Wide Engineering in Nonmodel Microbes. Biology 2022;11:571
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  29. Emma Kenshole, Marion Herisse, Michael Michael, Sacha J. Pidot. Natural product discovery through microbial genome mining. Current Opinion in Chemical Biology 2021;60:47
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  30. Norbert E. Juettner, Jan P. Bogen, Tobias A. Bauer, Stefan Knapp, Felicitas Pfeifer, Stefan H. Huettenhain, Reinhard Meusinger, Andreas Kraemer, Hans-Lothar Fuchsbauer. Decoding the Papain Inhibitor from Streptomyces mobaraensis as Being Hydroxylated Chymostatin Derivatives: Purification, Structure Analysis, and Putative Biosynthetic Pathway. J. Nat. Prod. 2020;83:2983
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  31. Khorshed Alam, Jinfang Hao, Lin Zhong, Guoqing Fan, Qing Ouyang, Md. Mahmudul Islam, Saiful Islam, Hongluan Sun, Youming Zhang, Ruijuan Li, Aiying Li. Complete genome sequencing and in silico genome mining reveal the promising metabolic potential in Streptomyces strain CS-7. Front. Microbiol. 2022;13
    https://doi.org/10.3389/fmicb.2022.939919
  32. Laura Prado-Alonso, Ignacio Pérez-Victoria, Mónica G. Malmierca, Ignacio Montero, Elisa Rioja-Blanco, Jesús Martín, Fernando Reyes, Carmen Méndez, José A. Salas, Carlos Olano, Isaac Cann. Colibrimycins, Novel Halogenated Hybrid Polyketide Synthase-Nonribosomal Peptide Synthetase (PKS-NRPS) Compounds Produced by Streptomyces sp. Strain CS147 . Appl Environ Microbiol 2022;88
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  33. Woori Kim, Soonkyu Hwang, Namil Lee, Yongjae Lee, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho. Transcriptome and translatome profiles of Streptomyces species in different growth phases. Sci Data 2020;7
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  34. Zhenyu Liu, Yatong Zhao, Chaoqun Huang, Yunzi Luo. Recent Advances in Silent Gene Cluster Activation in Streptomyces. Front. Bioeng. Biotechnol. 2021;9
    https://doi.org/10.3389/fbioe.2021.632230
  35. Yu-Si Yan, Hai-Yang Xia. Recent advances in the research of milbemycin biosynthesis and regulation as well as strategies for strain improvement. Arch Microbiol 2021;203:5849
    https://doi.org/10.1007/s00203-021-02575-1
  36. Ankit Sahoo, Khusbu Dwivedi, Waleed H Almalki, Ashok Kumar Mandal, Abdurrahman Alhamyani, Obaid Afzal, Abdulmalik Saleh Alfawaz Altamimi, Nabil K Alruwaili, Pradip Kumar Yadav, Md Abul Barkat, Tanuja Singh, Mahfoozur Rahman. Secondary metabolites in topical infectious diseases and nanomedicine applications. Nanomedicine 2024:1
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  37. Omnia Mohamed Abdallah, Amal Mohamed Shawky, Dina Hatem Amin, Alaa Fayez Elsayed. Actinobacteria. 2024.
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  38. Chunjun Zhan, Namil Lee, Guangxu Lan, Qingyun Dan, Aidan Cowan, Zilong Wang, Edward E. K. Baidoo, Ramu Kakumanu, Bridget Luckie, Rita C. Kuo, Joshua McCauley, Yuzhong Liu, Luis Valencia, Robert W. Haushalter, Jay D. Keasling. Improved polyketide production in C. glutamicum by preventing propionate-induced growth inhibition. Nat Metab 2023;5:1127
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  39. Xin Xie, Jia-Wei Zhu, Yi Liu, Hui Jiang. Application of Genetic Engineering Approaches to Improve Bacterial Metabolite Production. CPPS 2020;21:488
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  40. Liang Deng, Zhihu Zhao, Lin Liu, Zhiyu Zhong, Wenxinyu Xie, Fan Zhou, Wei Xu, Yubo Zhang, Zixin Deng, Yuhui Sun. Dissection of 3D chromosome organization in Streptomyces coelicolor A3(2) leads to biosynthetic gene cluster overexpression . Proc. Natl. Acad. Sci. U.S.A. 2023;120
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  41. Ismail Saadoun, Amjad Mahasneh, Jazi D. Odat, Ban Al-Joubori, Elsiddig Elsheikh. Cloning, sequencing, and characterizing of soil antibiotic active-producing Streptomyces species-specific DNA markers. Saudi Journal of Biological Sciences 2023;30:103854
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  42. Bumjoon Kim, Hyun Ju Kim, Sang Jun Lee. Effective Blocking of Microbial Transcriptional Initiation by dCas9-NG-Mediated CRISPR Interference. J. Microbiol. Biotechnol. 2020;30:1919
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  43. Tien T. Sword, J. William Barker, Madeline Spradley, Yan Chen, Christopher J. Petzold, Constance B. Bailey. Expression of blue pigment synthetase a from Streptomyces lavenduale reveals insights on the effects of refactoring biosynthetic megasynthases for heterologous expression in Escherichia coli.. Protein Expression and Purification 2023;210:106317
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  44. Arif Nurkanto, Masrukhin, Joseph Calvin Erdian Tampubolon, Muhammad Farrel Ewaldo, Ade Lia Putri, Shanti Ratnakomala, Ruby Setiawan, Ahmad Fathoni, Kartika Dyah Palupi, Yulia Rahmawati, Danang Waluyo, Erwahyuni Endang Prabandari, Sri Pujiyanto, Yuji Sumii, Andria Agusta, Norio Shibata, Sohkichi Matsumoto, Tomoyoshi Nozaki. Exploring Indonesian actinomycete extracts for anti-tubercular compounds: Integrating inhibition assessment, genomic analysis, and prediction of its target by molecular docking. Heliyon 2024;10:e35648
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  45. Jian Wang, Ke Wang, Zhe Deng, Zhiyu Zhong, Guo Sun, Qing Mei, Fuling Zhou, Zixin Deng, Yuhui Sun. Engineered cytosine base editor enabling broad-scope and high-fidelity gene editing in Streptomyces. Nat Commun 2024;15
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  46. Ho Joung Lee, Sang Jun Lee. Advances in Accurate Microbial Genome-Editing CRISPR Technologies. J. Microbiol. Biotechnol. 2021;31:903
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  47. Yu Du, Wei Han, Puyu Hao, Yongqiang Hu, Ting Hu, Yinxin Zeng. A Genomics-Based Discovery of Secondary Metabolite Biosynthetic Gene Clusters in the Potential Novel Strain Streptomyces sp. 21So2-11 Isolated from Antarctic Soil. Microorganisms 2024;12:1228
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  48. Soonkyu Hwang, Namil Lee, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho. Repurposing Modular Polyketide Synthases and Non-ribosomal Peptide Synthetases for Novel Chemical Biosynthesis. Front. Mol. Biosci. 2020;7
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  49. Yongjae Lee, Namil Lee, Soonkyu Hwang, Kangsan Kim, Woori Kim, Jihun Kim, Suhyung Cho, Bernhard O Palsson, Byung-Kwan Cho. System-level understanding of gene expression and regulation for engineering secondary metabolite production in Streptomyces . 2020;47:739
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  50. Wenzong Wang, Hao Tang, Xingjun Cui, Wenping Wei, Jing Wu, Bang-Ce Ye, Haruyuki Atomi. Engineering of a TetR family transcriptional regulator BkdR enhances heterologous spinosad production in Streptomyces albus B4 chassis . Appl Environ Microbiol 2024;90
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  51. Li Tian, Bingyu Yan, Dandan Huo, Wenhui Sun, Sufang Cui, Xiaojing Li, Xiangmei Zhang, Huijun Dong. Establishment of a visual gene knockout system based on CRISPR/Cas9 for the rare actinomycete Nonomuraea gerenzanensis. Biotechnol Lett 2023;45:401
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  52. Khorshed Alam, Jinfang Hao, Youming Zhang, Aiying Li. Synthetic biology-inspired strategies and tools for engineering of microbial natural product biosynthetic pathways. Biotechnology Advances 2021;49:107759
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  53. Rachel Javorova, Bronislava Rezuchova, Lubomira Feckova, Renata Novakova, Dominika Csolleiova, Maria Kopacova, Vladimir Patoprsty, Filip Opaterny, Beatrica Sevcikova, Jan Kormanec. A new synthetic biology system for investigating the biosynthesis of antibiotics and other secondary metabolites in streptomycetes. Journal of Biotechnology 2024;392:128
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  54. Matiss Maleckis, Mario Wibowo, Sam E. Williams, Charlotte H. Gotfredsen, Renata Sigrist, Luciano D. O. Souza, Michael S. Cowled, Pep Charusanti, Tetiana Gren, Subhasish Saha, José M. A. Moreira, Tilmann Weber, Ling Ding. Maramycin, a Cytotoxic Isoquinolinequinone Terpenoid Produced through Heterologous Expression of a Bifunctional Indole Prenyltransferase/Tryptophan Indole-Lyase in S. albidoflavus. ACS Chem. Biol. 2024;19:1303
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  55. Xiaoying Zhang, Qingbin Wu, Xiaoyuan Zhang, Zhongyuan Lv, Xiaoting Mo, Yongquan Li, Xin-ai Chen. Elevation of FK506 production by regulatory pathway engineering and medium optimization in Streptomyces tsukubaensis. Process Biochemistry 2021;111:139
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  56. Mengjing Cong, Xiaoyan Pang, Kai Zhao, Yue Song, Yonghong Liu, Junfeng Wang. Deep-Sea Natural Products from Extreme Environments: Cold Seeps and Hydrothermal Vents. Marine Drugs 2022;20:404
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  58. Soonkyu Hwang, Namil Lee, Donghui Choe, Yongjae Lee, Woori Kim, Yujin Jeong, Suhyung Cho, Bernhard O. Palsson, Byung-Kwan Cho, Rafael Silva-Rocha. Elucidating the Regulatory Elements for Transcription Termination and Posttranscriptional Processing in the Streptomyces clavuligerus Genome. mSystems 2021;6
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  59. D. K. Induja, A. R. S. Jesmina, Manu M. Joseph, Shanmughan Shamjith, Nagaraja Ingaladal, Kaustabh Kumar Maiti, B. S. Dileep Kumar, Ravi S. Lankalapalli. Isolation of two new stereochemical variants of streptophenazine by cocultivation of Streptomyces NIIST-D31, Streptomyces NIIST-D47, and Streptomyces NIIST-D63 strains in 3C2 combinations. J Antibiot 2023;76:567
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  61. Shigenari Yamaguchi, Tomonori Fujioka, Akira Yoshimi, Toshitaka Kumagai, Maiko Umemura, Keietsu Abe, Masayuki Machida, Kiyoshi Kawai. Discovery of a gene cluster for the biosynthesis of novel cyclic peptide compound, KK-1, in Curvularia clavata. Front. Fungal Biol. 2023;3
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  62. Apolonio Alves de Lima Júnior, Ednan Cardoso de Sousa, Thales Henrique Barbosa de Oliveira, Raphael Carlos Férrer de Santana, Silvia Katrine Rabelo da Silva, Luana Cassandra Breitenbach Barroso Coelho. Genus Streptomyces: Recent advances for biotechnological purposes. Biotech and App Biochem 2023;70:1504
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  63. Sergii Krysenko. Impact of Nitrogen-Containing Compounds on Secondary Metabolism in Streptomyces spp.—A Source of Metabolic Engineering Strategies. SynBio 2023;1:204
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  66. Dominika Csolleiova, Rachel Javorova, Renata Novakova, Lubomira Feckova, Maria Matulova, Filip Opaterny, Bronislava Rezuchova, Beatrica Sevcikova, Jan Kormanec. Investigating the initial steps of auricin biosynthesis using synthetic biology. AMB Expr 2023;13
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  67. Mingxia Zhao, Zhiqiang Yang, Xinyue Li, Yaqi Liu, Yingying Zhang, Mengqian Zhang, Yangli Li, Xincheng Wang, Zixin Deng, Kui Hong, Dongqing Zhu. Development of Integrated Vectors with Strong Constitutive Promoters for High-Yield Antibiotic Production in Mangrove-Derived Streptomyces. Marine Drugs 2024;22:94
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  68. Esteban Martínez-García, Sofía Fraile, Elena Algar, Tomás Aparicio, Elena Velázquez, Belén Calles, Huseyin Tas, Blas Blázquez, Bruno Martín, Clara Prieto, Lucas Sánchez-Sampedro, Morten H H Nørholm, Daniel C Volke, Nicolas T Wirth, Pavel Dvořák, Lorea Alejaldre, Lewis Grozinger, Matthew Crowther, Angel Goñi-Moreno, Pablo I Nikel, Juan Nogales, Víctor de Lorenzo. SEVA 4.0: an update of the Standard European Vector Architecture database for advanced analysis and programming of bacterial phenotypes. 2023;51:D1558
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  71. Xiao Xu, Falei Zhang, Luning Zhou, Yimin Chang, Qian Che, Tianjiao Zhu, Dehai Li, Guojian Zhang. Overexpression of Global Regulator SCrp Leads to the Discovery of New Angucyclines in Streptomyces sp. XS-16. Marine Drugs 2023;21:240
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