전체메뉴
검색
Article Search

JMB Journal of Microbiolog and Biotechnology

QR Code QR Code

Minireview

References

  1. Berg RD. 1996. The indigenous gastrointestinal microflora. Trends Microbiol. 4: 430-435.
    CrossRef
  2. Manson JM, Rauch M, Gilmore MS. 2008. The commensal microbiology of the gastrointestinal tract. Adv. Exp. Med. Biol. 635: 15-28.
    Pubmed CrossRef
  3. Xu J, Bjursell MK, Himrod J, Deng S, Carmichael LK, Chiang HC, et al. 2003. A genomic view of the humanBacteroides thetaiotaomicron symbiosis. Science 299: 2074-2076.
    Pubmed CrossRef
  4. Sonnenburg JL, Angenent LT, Gordon JI. 2004. Getting a grip on things: how do communities of bacterial symbionts become established in our intestine? Nat. Immun. 5: 569-573.
    Pubmed CrossRef
  5. Kim HB, Isaacson RE. 2015. The pig gut microbial diversity:understanding the pig gut microbial ecology through the next generation high throughput sequencing. Vet. Microbiol. 177: 242-251.
    Pubmed CrossRef
  6. Isaacson R, Kim HB. 2012. The intestinal microbiome of the pig. Anim. Health Res. Rev. 13: 100-109.
    Pubmed CrossRef
  7. Schmalenberger A, Schwieger F, Tebbe CC. 2001. Effect of primers hybridizing to different evolutionarily conserved regions of the small-subunit rRNA gene in PCR-based microbial community analyses and genetic profiling. Appl. Environ. Microbiol. 67: 3557-3563.
    Pubmed PMC CrossRef
  8. Chakravorty S, Helb D, Burday M, Connell N, Alland D. 2007. A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria. J. Microbiol. Methods 69: 330-339.
    Pubmed PMC CrossRef
  9. Sogin ML, Morrison HG, Huber JA, Mark Welch D, Huse SM, Neal PR, et al. 2 006. Microbial diversity in the deep sea and the underexplored “rare biosphere”. Proc. Natl. Acad. Sci. USA 103: 12115-12120.
    Pubmed PMC CrossRef
  10. Huber JA, Mark Welch DB, Morrison HG, Huse SM, Neal PR, Butterfield DA, et al. 2007. Microbial population structures in the deep marine biosphere. Science 318: 97-100.
    Pubmed CrossRef
  11. Highlander SK. 2012. High throughput sequencing methods for microbiome profiling: application to food animal systems. Anim. Health Res. Rev. 13: 40-53.
    Pubmed CrossRef
  12. Sanschagrin S, Yergeau E. 2014. Next-generation sequencing of 16S ribosomal RNA gene amplicons. J. Vis. Exp. DOI: 10.3791/51709.
    CrossRef
  13. Schloss PD, Handelsman J. 2005. Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl. Environ. Microbiol. 71: 1501-1506.
    Pubmed PMC CrossRef
  14. Schloss PD, Handelsman J. 2006. Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures. Appl. Environ. Microbiol. 72: 6773-6779.
    Pubmed PMC CrossRef
  15. Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, et al. 2009. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75: 7537-7541.
    Pubmed PMC CrossRef
  16. Chao A. 1984. Non-parametric estimation of the number of classes in a population. Scand. J. Stat. 11: 265-270.
  17. Chao A, Bunge J. 2002. Estimating the number of species in a stochastic abundance model. Biometrics 58: 531-539.
    Pubmed CrossRef
  18. Chao A, Chazdon RL, Colwell RK, Shen TJ. 2006. Abundance-based similarity indices and their estimation when there are unseen species in samples. Biometrics 62: 361-371.
    Pubmed CrossRef
  19. Hughes JB, Bohannan BJM. 2004. Application of ecological diversity statistics in microbial ecology. Mol. Microb. Ecol. Manual 7.01: 1321-1344.
  20. Haegeman B, Hamelin J, Moriarty J, Neal P, Dushoff J, Weitz JS. 2013. Robust estimation of microbial diversity in theory and in practice. ISME J. 7: 1092-1101.
    Pubmed PMC CrossRef
  21. Lemos LN, Fulthorpe RR, Triplett EW, Roesch LF. 2011. Rethinking microbial diversity analysis in the high throughput sequencing era. J. Microbiol. Methods 86: 42-51.
    Pubmed CrossRef
  22. Magurran A. 2004. Measuring Biological Diversity. Blackwell Science Ltd, Oxford, United Kingdom.
  23. Simpson EH. 1949. Measurement of diversity. Nature 163: 688.
    CrossRef
  24. Hughes JB, Hellmann JJ, Ricketts TH, Bohannan BJ. 2001. Counting the uncountable: statistical approaches to estimating microbial diversity. Appl. Environ. Microbiol. 67: 4399-4406.
    Pubmed PMC CrossRef
  25. Sanders HL. 1969. Benthic marine diversity and the stability-time hypothesis. Brookhaven Symp. Biol. 22: 71-81.
    Pubmed
  26. Efron B, Tibshirani R. 1993. An Introduction to the Bootsrap. Chapman & Hall, New York.
    CrossRef
  27. Shen TJ, Chao A, Ling C. 2003. Predicting the number of new species in further taxonomic sampling. Ecology 84: 798-804.
    CrossRef
  28. Chao A, Lee S. 1992. Estimating the number of classes via sample coverage. J. Am. Stat. Assoc. 87: 210-217.
    CrossRef
  29. Chao A, Ma M, Yang M. 1993. Stopping rules and estimation for recapture debugging with unequal failure rates. Biometrika 80: 193-201.
    CrossRef
  30. Sornplang P, Piyadeatsoontorn S. 2016. Probiotic isolates from unconventional sources: a review. J. Anim. Sci. Technol. 58: 26.
    Pubmed PMC CrossRef

Related articles in JMB

More Related Articles